Merge pull request #41 from hechth/hechth/issue33

Added visualization tools and slight rearrangements

Author: martenson

galaxy-umsa.grid.cesnet.cz/post_processing.yml

@@ -45,6 +45,7 @@ tools:
   - 071a424241ec
   - 1a2aeb8137bf
   - 6480c6d5fa36
+  - 6fc9f6dbcef5
   - bf32ae95a06f
   tool_panel_section_id: recetox
   tool_panel_section_label: RECETOX
@@ -103,6 +104,7 @@ tools:
   owner: galaxyp
   revisions:
   - 19e45916daf9
+  - 5c04f9decc01
   tool_panel_section_id: recetox
   tool_panel_section_label: RECETOX
 - name: assign_ri_from_comment
@@ -160,5 +162,6 @@ tools:
   owner: recetox
   revisions:
   - 2b1118bce0b1
+  - 964b4559eb1b
   tool_panel_section_id: recetox
   tool_panel_section_label: RECETOX

galaxy-umsa.grid.cesnet.cz/post_processing.yml.lock

@@ -14,6 +14,18 @@ tools:
   owner: iuc
 - name: ggplot2_point
   owner: iuc
+- name: ggplot2_boxplot
+  owner: iuc
+- name: ggplot2_barplot
+  owner: iuc
+- name: seaborn
+  owner: iuc
+- name: seaborn_pairgrid
+  owner: iuc
+- name: upsetplot
+  owner: iuc
+- name: maplot
+  owner: iuc
 - name: rcx_boxplot
   owner: recetox
 - name: heatmap

galaxy-umsa.grid.cesnet.cz/recetox.yml.lock

@@ -13,20 +13,23 @@ tools:
   revisions:
   - 0e7290688b50
   - 17b666467c32
+  - 63d211052ffb
   - dfd5d981b5a4
   tool_panel_section_id: visualization
   tool_panel_section_label: Visualization
 - name: ggplot2_heatmap
   owner: iuc
   revisions:
   - 10515715c940
+  - 15cebddc6dba
   - 1a72f938213e
   - 391a4cc45fea
   tool_panel_section_id: visualization
   tool_panel_section_label: Visualization
 - name: ggplot2_pca
   owner: iuc
   revisions:
+  - 1df3b30325dd
   - 7e616a1bdb07
   - ae344ccf9d62
   - b1268b7544d3
@@ -36,6 +39,7 @@ tools:
   owner: iuc
   revisions:
   - 398e5104f8a2
+  - 6b9816a913de
   - 6fc8bab811da
   - b0d96516e6a5
   tool_panel_section_id: visualization
@@ -54,6 +58,43 @@ tools:
   revisions:
   - 5298e06f14f9
   - e3a675da7fd0
+  - f87634b12749
+  tool_panel_section_id: visualization
+  tool_panel_section_label: Visualization
+- name: ggplot2_boxplot
+  owner: iuc
+  revisions:
+  - 653803fab921
+  tool_panel_section_id: visualization
+  tool_panel_section_label: Visualization
+- name: ggplot2_barplot
+  owner: iuc
+  revisions:
+  - 41e9114cc7cd
+  tool_panel_section_id: visualization
+  tool_panel_section_label: Visualization
+- name: seaborn
+  owner: iuc
+  revisions:
+  - 293a939f28c8
+  tool_panel_section_id: visualization
+  tool_panel_section_label: Visualization
+- name: seaborn_pairgrid
+  owner: iuc
+  revisions:
+  - 4a46d83cb08f
+  tool_panel_section_id: visualization
+  tool_panel_section_label: Visualization
+- name: upsetplot
+  owner: iuc
+  revisions:
+  - ec6141f6e5cb
+  tool_panel_section_id: visualization
+  tool_panel_section_label: Visualization
+- name: maplot
+  owner: iuc
+  revisions:
+  - e9212adafd7a
   tool_panel_section_id: visualization
   tool_panel_section_label: Visualization
 - name: rcx_boxplot
@@ -72,11 +113,13 @@ tools:
   owner: workflow4metabolomics
   revisions:
   - 51015f22fcb7
+  - cbedca3ba6e1
   tool_panel_section_id: visualization
   tool_panel_section_label: Visualization
 - name: xcms_plot_raw
   owner: workflow4metabolomics
   revisions:
   - 520448a32548
+  - 8b8d360316c3
   tool_panel_section_id: visualization
   tool_panel_section_label: Visualization

galaxy-umsa.grid.cesnet.cz/visualization.yml

@@ -1,10 +1,12 @@
 tool_panel_section_label: W4M
 tools:
-- name: xcms_refine
-  owner: workflow4metabolomics
 - name: qualitymetrics
   owner: ethevenot
 - name: bank_inhouse
   owner: fgiacomoni
 - name: batchcorrection
   owner: melpetera
+- name: tablemerge
+  owner: melpetera
+- name: checkformat
+  owner: ethevenot

galaxy-umsa.grid.cesnet.cz/visualization.yml.lock

@@ -2,13 +2,6 @@ install_repository_dependencies: true
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
-- name: xcms_refine
-  owner: workflow4metabolomics
-  revisions:
-  - 090b33a9981c
-  - 6c2798bce3eb
-  tool_panel_section_id: w4m
-  tool_panel_section_label: W4M
 - name: qualitymetrics
   owner: ethevenot
   revisions:
@@ -27,3 +20,15 @@ tools:
   - 23314e1192d4
   tool_panel_section_id: w4m
   tool_panel_section_label: W4M
+- name: tablemerge
+  owner: melpetera
+  revisions:
+  - e44c5246247a
+  tool_panel_section_id: w4m
+  tool_panel_section_label: W4M
+- name: checkformat
+  owner: ethevenot
+  revisions:
+  - e7c5811ec12f
+  tool_panel_section_id: w4m
+  tool_panel_section_label: W4M

galaxy-umsa.grid.cesnet.cz/w4m.yml

@@ -18,3 +18,5 @@ tools:
   owner: lecorguille
 - name: xcms_export_samplemetadata
   owner: lecorguille
+- name: xcms_refine
+  owner: workflow4metabolomics

galaxy-umsa.grid.cesnet.cz/w4m.yml.lock

@@ -74,3 +74,10 @@ tools:
   - e13c7bc91c63
   tool_panel_section_id: xcms
   tool_panel_section_label: XCMS
+- name: xcms_refine
+  owner: workflow4metabolomics
+  revisions:
+  - 090b33a9981c
+  - 6c2798bce3eb
+  tool_panel_section_id: xcms
+  tool_panel_section_label: XCMS