Merge pull request #56 from CESNET/create-pull-request/usegalaxy.cz

Update all tools of usegalaxy.cz

Author: martenson

usegalaxy.cz/assembly.yml.lock

@@ -564,6 +564,7 @@ tools:
   owner: bgruening
   revisions:
   - 1f9f2edc8cf4
+  - bdfd7cef3438
   tool_panel_section_id: assembly
   tool_panel_section_label: Assembly
 - name: instagraal

usegalaxy.cz/convert_formats.yml.lock

@@ -225,6 +225,7 @@ tools:
 - name: ucsc_twobittofa
   owner: iuc
   revisions:
+  - 6e1aa95afa75
   - 8067dfa00ed2
   - e9bbe2f71784
   tool_panel_section_id: convert_formats
@@ -260,6 +261,7 @@ tools:
   revisions:
   - 0b663ca9a961
   - 18dbde5680c0
+  - 85a38dffb93d
   tool_panel_section_id: convert_formats
   tool_panel_section_label: Convert Formats
 - name: ab1_fastq_converter

usegalaxy.cz/fasta_fastq.yml.lock

@@ -261,6 +261,7 @@ tools:
   revisions:
   - 10678d49d39e
   - 25c59c0ceb55
+  - 281054a26e41
   - 480ddbd12a03
   - 65b93b623c77
   - e25816738ef3

usegalaxy.cz/metabolomics.yml.lock

@@ -595,11 +595,13 @@ tools:
   revisions:
   - 09cabbc3d12d
   - da7722f665f4
+  - f52181a205d3
   tool_panel_section_id: metabolomics
   tool_panel_section_label: Metabolomics
 - name: ramclustr_define_experiment
   owner: recetox
   revisions:
+  - ef3cbcdf5f5d
   - f2c1d0bbb074
   tool_panel_section_id: metabolomics
   tool_panel_section_label: Metabolomics

usegalaxy.cz/rna_analysis.yml.lock

@@ -449,6 +449,7 @@ tools:
 - name: deg_annotate
   owner: iuc
   revisions:
+  - e81fbbea6e8f
   - e98d4ab5b5bc
   tool_panel_section_id: rna_analysis
   tool_panel_section_label: RNA Analysis

usegalaxy.cz/sam_bam.yml.lock

@@ -14,6 +14,7 @@ tools:
   revisions:
   - ae36fab06bc2
   - c4ff13d2aab3
+  - ddbd49b892e5
   - f4f7f632815d
   tool_panel_section_id: sam_bam
   tool_panel_section_label: SAM/BAM
@@ -50,13 +51,15 @@ tools:
 - name: samtools_flagstat
   owner: devteam
   revisions:
+  - fbc6c28a5b14
   - fe34990e5ce7
   - fefd89ab563c
   tool_panel_section_id: sam_bam
   tool_panel_section_label: SAM/BAM
 - name: samtools_mpileup
   owner: devteam
   revisions:
+  - 32f6fffbc3e9
   - 9da0311ab1dd
   - b61f5d6a7f25
   tool_panel_section_id: sam_bam
@@ -72,18 +75,21 @@ tools:
   revisions:
   - 344fc91e1bfd
   - b8beef827165
+  - fea1a167b822
   tool_panel_section_id: sam_bam
   tool_panel_section_label: SAM/BAM
 - name: samtools_view
   owner: iuc
   revisions:
   - 32dc5f781059
+  - 48bbbcb692ce
   - 5826298f6a73
   tool_panel_section_id: sam_bam
   tool_panel_section_label: SAM/BAM
 - name: samtools_reheader
   owner: devteam
   revisions:
+  - 2d7f0d455ad4
   - 85e38b31e8b3
   - bb8cfc6f6e0c
   tool_panel_section_id: sam_bam
@@ -105,6 +111,7 @@ tools:
 - name: bamtools
   owner: devteam
   revisions:
+  - 8eb649e67987
   - 970e6333f07e
   - ddb22028b552
   tool_panel_section_id: sam_bam
@@ -119,6 +126,7 @@ tools:
 - name: samtools_markdup
   owner: iuc
   revisions:
+  - 229ba92a3b55
   - 40fa6c240105
   - b5527cc104ab
   - ce32171c6d44
@@ -128,12 +136,14 @@ tools:
   owner: iuc
   revisions:
   - 36677f429310
+  - a7617eb92baf
   - cae2794d2deb
   tool_panel_section_id: sam_bam
   tool_panel_section_label: SAM/BAM
 - name: samtools_fastx
   owner: iuc
   revisions:
+  - 9038311ed624
   - b3d99709fe1a
   - b906586a6596
   tool_panel_section_id: sam_bam
@@ -142,6 +152,7 @@ tools:
   owner: iuc
   revisions:
   - 41e36c99a008
+  - c05afbeaf42d
   - d2df79922531
   tool_panel_section_id: sam_bam
   tool_panel_section_label: SAM/BAM
@@ -150,12 +161,14 @@ tools:
   revisions:
   - 3a0efe14891f
   - 541082d03bef
+  - e221fe58c2f5
   tool_panel_section_id: sam_bam
   tool_panel_section_label: SAM/BAM
 - name: samtools_idxstats
   owner: devteam
   revisions:
   - 7def34e6cf4d
+  - c9d9f721a568
   - fa5d3e61e429
   tool_panel_section_id: sam_bam
   tool_panel_section_label: SAM/BAM
@@ -177,19 +190,22 @@ tools:
   revisions:
   - 46c6639921f1
   - 6856f8a01905
+  - 762f63d4e25d
   tool_panel_section_id: sam_bam
   tool_panel_section_label: SAM/BAM
 - name: samtools_depth
   owner: iuc
   revisions:
   - 56faa6a57e50
+  - '772919943459'
   - 971dc85e9441
   tool_panel_section_id: sam_bam
   tool_panel_section_label: SAM/BAM
 - name: samtools_sort
   owner: devteam
   revisions:
   - 6c2c1836728b
+  - 9ede25e390ff
   - d54a4df48867
   tool_panel_section_id: sam_bam
   tool_panel_section_label: SAM/BAM
@@ -203,13 +219,15 @@ tools:
   owner: devteam
   revisions:
   - 108db6635177
+  - 62e4d6cdbaa7
   - 993b19f20c76
   tool_panel_section_id: sam_bam
   tool_panel_section_label: SAM/BAM
 - name: samtools_calmd
   owner: devteam
   revisions:
   - 26b4f9f98aca
+  - 3d5853a84711
   - 92ec40abcdcf
   tool_panel_section_id: sam_bam
   tool_panel_section_label: SAM/BAM
@@ -264,6 +282,7 @@ tools:
   revisions:
   - 4967154b9859
   - 5f3ea90dc6ae
+  - f597cb9b33bf
   tool_panel_section_id: sam_bam
   tool_panel_section_label: SAM/BAM
 - name: revertr2orientationinbam
@@ -283,12 +302,14 @@ tools:
   revisions:
   - 0e60e2dd20af
   - 30fdbaccb96b
+  - 73913bb77da3
   - cf1ffd88f895
   tool_panel_section_id: sam_bam
   tool_panel_section_label: SAM/BAM
 - name: bam_to_sam
   owner: devteam
   revisions:
+  - 2b7acdca5fe1
   - 3c661e57a88f
   - 88eedb4abea0
   - dc20f447c0e2

usegalaxy.cz/variant_calling.yml.lock

@@ -13,6 +13,7 @@ tools:
   revisions:
   - 468b90c41cde
   - 6f52ebc01098
+  - 7021ed347f7e
   - 93cfe7df7f8a
   tool_panel_section_id: variant_calling
   tool_panel_section_label: Variant Calling
@@ -22,6 +23,7 @@ tools:
   - 00e20a06ff1e
   - 311d11c4a68b
   - 372def2f8fd6
+  - c23737f9714f
   tool_panel_section_id: variant_calling
   tool_panel_section_label: Variant Calling
 - name: manta