disable installation of ts dependencies for all sections

martenson · martenson · commit 96a2b22f9b2a · 2025-12-03T14:13:55.000+01:00
this is a much saner default
(this relates to old toolshed deps)
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/annotation.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/annotation.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/assembly.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/assembly.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/bed.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/bed.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/biodiversity_data_exploration.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/biodiversity_data_exploration.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/chemicaltoolbox.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/chemicaltoolbox.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/collection_operations.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/collection_operations.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/convert_formats.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/convert_formats.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/deeptools.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/deeptools.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/emboss.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/emboss.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/epigenetics.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/epigenetics.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/evolution.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/evolution.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tool_panel_section_label: Evolution
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/expression_tools.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/expression_tools.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tool_panel_section_label: Expression Tools
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/extract_features.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/extract_features.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/fasta_fastq.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/fasta_fastq.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/fetch_alignments_sequences.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/fetch_alignments_sequences.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/filter_and_sort.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/filter_and_sort.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/gemini.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/gemini.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/genome_editing.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/genome_editing.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/get_data.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/get_data.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/graph_display_data.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/graph_display_data.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/graphclust.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/graphclust.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/hca_single_cell.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/hca_single_cell.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/hicexplorer.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/hicexplorer.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/imaging.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/imaging.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/join__subtract_and_group.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/join__subtract_and_group.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/mapping.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/mapping.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/metabolomics.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/metabolomics.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/metagenomic_analysis.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/metagenomic_analysis.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/mimodd.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/mimodd.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/mothur.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/mothur.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/multiple_alignments.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/multiple_alignments.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/nanopore.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/nanopore.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/obo_ontology_manipulation.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/obo_ontology_manipulation.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/operate_on_genomic_intervals.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/operate_on_genomic_intervals.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/other_tools.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/other_tools.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/peak_calling.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/peak_calling.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/phenotype_association.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/phenotype_association.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/phylogenetics.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/phylogenetics.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/picard.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/picard.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/proteomics.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/proteomics.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/qiime.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/qiime.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/qiime_2.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/qiime_2.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tool_panel_section_label: QIIME 2
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/quality_control.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/quality_control.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/rad_seq.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/rad_seq.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/rna_analysis.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/rna_analysis.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/sam_bam.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/sam_bam.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/sanger_sequencing.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/sanger_sequencing.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/scanpy.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/scanpy.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/send_data.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/send_data.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/single_cell.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/single_cell.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/spatial_omics.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/spatial_omics.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/statistics.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/statistics.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/test_tools.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/test_tools.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/text_manipulation.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/text_manipulation.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/transcriptomics.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/transcriptomics.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tool_panel_section_label: CellTypeScan
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/variant_calling.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/variant_calling.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/vcf_bcf.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/vcf_bcf.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:
diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/virology.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/virology.yml.lock
@@ -1,4 +1,4 @@
-install_repository_dependencies: true
+install_repository_dependencies: false
 install_resolver_dependencies: false
 install_tool_dependencies: false
 tools:

Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,4 @@`
`1`		`-install_repository_dependencies: true`
	`1`	`+install_repository_dependencies: false`
`2`	`2`	`install_resolver_dependencies: false`
`3`	`3`	`install_tool_dependencies: false`
`4`	`4`	`tools:`