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martensonmartenson
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Merge pull request #184 from martenson/zenodo
enable zenodo on GCZ and QA1
2 parents 296a70a + 8252856 commit ab5ce41

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+128
-19
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6 files changed

+128
-19
lines changed

‎files/galaxy-qa1.galaxy.cloud.e-infra.cz/file_sources_conf.yml

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- type: inveniordm
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id: invenio_sandbox
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doc: Testing instance of Invenio, content is NOT preserved and DOIs created in this instance are not real.
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label: InvenioRDM TESTING
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url: https://inveniordm.web.cern.ch/
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token: ${user.user_vault.read_secret('preferences/invenio_sandbox/token')}
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public_name: ${user.preferences['invenio_sandbox|public_name']}
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writable: true
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- type: zenodo
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id: zenodo_sandbox
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doc: Testing instance of Zenodo, content is NOT preserved and DOIs created in this instance are not real.
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label: Zenodo TESTING
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url: https://sandbox.zenodo.org
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token: ${user.user_vault.read_secret('preferences/zenodo_sandbox/token')}
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public_name: ${user.preferences['zenodo_sandbox|public_name']}
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writable: true
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- type: zenodo
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id: zenodo
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doc: Zenodo is a general-purpose open-access repository. For each submission, a DOI is created, making items easily citeable.
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label: Zenodo
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url: https://zenodo.org
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token: ${user.user_vault.read_secret('preferences/zenodo/token')}
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public_name: ${user.preferences['zenodo|public_name']}
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writable: true

‎files/galaxy-qa1.galaxy.cloud.e-infra.cz/user_preferences_extra_conf.yml

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preferences:
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invenio_sandbox:
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description: Your Invenio RDM _SANDBOX_ Account
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inputs:
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- name: token
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label: Personal Token to publish records to Invenio RDM
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type: secret
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store: vault
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required: False
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- name: public_name
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label: Public name to publish records (formatted as "Lastname, Firstname")
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type: text
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required: False
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- name: public_records
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label: Whether to make new draft records publicly accessible (Yes) or restricted (No).
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type: boolean
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required: False
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zenodo_sandbox:
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description: Your Zenodo _SANDBOX_ Account
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inputs:
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- name: token
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label: Personal Access Token used to create draft records and to upload files. You can manage your tokens at https://sandbox.zenodo.org/account/settings/applications/
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type: secret
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store: vault
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required: False
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- name: public_name
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label: Creator name to associate with new records (formatted as "Last name, First name"). If left blank "Anonymous Galaxy User" will be used. You can always change this by editing your record directly.
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type: text
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required: False
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zenodo:
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description: Your Zenodo Account
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inputs:
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- name: token
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label: Personal Access Token used to create draft records and to upload files. You can manage your tokens at https://zenodo.org/account/settings/applications/
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type: secret
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store: vault
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required: False
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- name: public_name
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label: Creator name to associate with new records (formatted as "Last name, First name"). If left blank "Anonymous Galaxy User" will be used. You can always change this by editing your record directly.
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type: text
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required: False

‎files/galaxy-qa2.galaxy.cloud.e-infra.cz/file_sources_conf.yml

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@@ -1,7 +1,7 @@
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- type: inveniordm
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id: invenio_sandbox
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doc: This is the Sandbox instance of Invenio. It is used for testing purposes only, content is NOT preserved. DOIs created in this instance are not real and will not resolve.
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label: Invenio RDM Sandbox Repository (TESTING)
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label: InvenioRDM TESTING
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url: https://inveniordm.web.cern.ch/
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token: ${user.user_vault.read_secret('preferences/invenio_sandbox/token')}
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public_name: ${user.preferences['invenio_sandbox|public_name']}

‎files/usegalaxy.cz/file_sources_conf.yml

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@@ -1,8 +1,24 @@
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- type: inveniordm
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id: invenio_sandbox
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doc: This is the Sandbox instance of Invenio. It is used for testing purposes only, content is NOT preserved. DOIs created in this instance are not real and will not resolve.
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label: Invenio RDM Sandbox Repository (TESTING)
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doc: Testing instance of Invenio, content is NOT preserved and DOIs created in this instance are not real.
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label: InvenioRDM TESTING
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url: https://inveniordm.web.cern.ch/
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token: ${user.user_vault.read_secret('preferences/invenio_sandbox/token')}
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public_name: ${user.preferences['invenio_sandbox|public_name']}
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writable: true
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- type: zenodo
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id: zenodo_sandbox
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doc: Testing instance of Zenodo, content is NOT preserved and DOIs created in this instance are not real.
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label: Zenodo TESTING
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url: https://sandbox.zenodo.org
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token: ${user.user_vault.read_secret('preferences/zenodo_sandbox/token')}
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public_name: ${user.preferences['zenodo_sandbox|public_name']}
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writable: true
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- type: zenodo
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id: zenodo
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doc: Zenodo is a general-purpose open-access repository. For each submission, a DOI is created, making items easily citeable.
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label: Zenodo
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url: https://zenodo.org
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token: ${user.user_vault.read_secret('preferences/zenodo/token')}
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public_name: ${user.preferences['zenodo|public_name']}
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writable: true

‎files/usegalaxy.cz/user_preferences_extra_conf.yml

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preferences:
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invenio_sandbox:
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description: Your Invenio RDM _SANDBOX_ Account
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inputs:
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- name: token
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label: Personal Token to publish records to Invenio RDM
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type: secret
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store: vault
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required: False
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- name: public_name
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label: Public name to publish records (formatted as "Lastname, Firstname")
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type: text
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required: False
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- name: public_records
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label: Whether to make new draft records publicly accessible (Yes) or restricted (No).
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type: boolean
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required: False
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invenio_sandbox:
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description: Your Invenio RDM _SANDBOX_ Account
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inputs:
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- name: token
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label: Personal Token to publish records to Invenio RDM
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type: secret
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store: vault
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required: False
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- name: public_name
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label: Public name to publish records (formatted as "Lastname, Firstname")
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type: text
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required: False
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- name: public_records
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label: Whether to make new draft records publicly accessible (Yes) or restricted (No).
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type: boolean
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required: False
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zenodo_sandbox:
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description: Your Zenodo _SANDBOX_ Account
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inputs:
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- name: token
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label: Personal Access Token used to create draft records and to upload files. You can manage your tokens at https://sandbox.zenodo.org/account/settings/applications/
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type: secret
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store: vault
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required: False
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- name: public_name
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label: Creator name to associate with new records (formatted as "Last name, First name"). If left blank "Anonymous Galaxy User" will be used. You can always change this by editing your record directly.
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type: text
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required: False
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zenodo:
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description: Your Zenodo Account
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inputs:
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- name: token
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label: Personal Access Token used to create draft records and to upload files. You can manage your tokens at https://zenodo.org/account/settings/applications/
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type: secret
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store: vault
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required: False
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- name: public_name
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label: Creator name to associate with new records (formatted as "Last name, First name"). If left blank "Anonymous Galaxy User" will be used. You can always change this by editing your record directly.
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type: text
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required: False

‎host_vars/galaxy-qa1.galaxy.cloud.e-infra.cz/vars.yml

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dest: "{{ galaxy_config_dir }}/oidc_config.xml"
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- src: "files/{{ inventory_hostname }}/all_tools.yml"
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dest: "{{ galaxy_config_dir }}/plugins/activities/all_tools.yml"
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- src: files/{{ inventory_hostname }}/file_sources_conf.yml
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dest: "{{ galaxy_config_dir }}/file_sources_conf.yml"
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- src: files/{{ inventory_hostname }}/user_preferences_extra_conf.yml
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dest: "{{ galaxy_config_dir }}/user_preferences_extra_conf.yml"

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