Installation of external libraries

[shamseen]

jacop and mini-eugene

These libraries have to be installed separately, so users on a fresh machine have to find them and install. We could write up documentation and/or an installation guide for new users OR automate the process with a resources folder.

commands in install.sh:
mvn install:install-file -Dfile=jacop-4.1.0.jar -DgroupId=org -DartifactId=jacop -Dversion=4.1.0 -Dpackaging=jar

mvn install:install-file -Dfile=miniEugene-core-1.0.0-jar-with-dependencies.jar -DgroupId=org.cidarlab -DartifactId=miniEugene-core -Dversion=1.0 -Dpackaging=jar

[eoberortner]

Nowadays, jacop is available via a maven-repo: https://mvnrepository.com/artifact/org.jacop/jacop/4.4.0 <https://mvnrepository.com/artifact/org.jacop/jacop/4.4.0> it’ll be nice to make mini-eugene available via a maven-repo. then, Eugene and EugeneLab (and other tools) can grab it from there.

…

On May 17, 2017, at 12:15 PM, Shamseen ***@***.***> wrote: jacop and mini-eugene These libraries have to be installed separately, so users on a fresh machine have to find them and install. We should write up documentation and/or an installation guide for new users. — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#2>, or mute the thread <https://github.com/notifications/unsubscribe-auth/ABUOZnGIG6Lccb3melfzJjzEsiWjCPvrks5r60dZgaJpZM4NeUeK>.

[shamseen]

Hey Ernst, for now we'll just change the jacop dependency and leave mini-eugene up for discussion! Thanks

Edit: works as long as we skip the tests (it failed with the manual dependency too).
$ mvn clean package -Dmaven.test.skip=true

Failed test:

-------------------------------------------------------------------------------
Test set: org.cidarlab.eugene.units.RulesTest
-------------------------------------------------------------------------------
Tests run: 3, Failures: 1, Errors: 0, Skipped: 0, Time elapsed: 0.203 sec <<< FAILURE!
testSpecificationDocumentExample(org.cidarlab.eugene.units.RulesTest)  Time elapsed: 0.079 sec  <<< FAILURE!
java.lang.AssertionError: Constant c 930968366 is not in the allowed range 
	at org.jacop.constraints.XeqC.<init>(XeqC.java:79)
	at org.cidarlab.minieugene.solver.jacop.JaCoPSolver.model(JaCoPSolver.java:183)
	at org.cidarlab.minieugene.solver.jacop.JaCoPSolver.solve(JaCoPSolver.java:101)
	at org.cidarlab.minieugene.MiniEugene.solve(MiniEugene.java:426)
	at org.cidarlab.minieugene.MiniEugene.solve(MiniEugene.java:237)
	at org.cidarlab.eugene.minieugene.MiniEugeneAdapter.execute(MiniEugeneAdapter.java:165)
	at org.cidarlab.eugene.minieugene.MiniEugeneAdapter.product(MiniEugeneAdapter.java:106)
	at org.cidarlab.eugene.interp.Interp.productPrimitiveDevice(Interp.java:956)
	at org.cidarlab.eugene.interp.Interp.product(Interp.java:703)
	at org.cidarlab.eugene.parser.EugeneParser.built_in_function(EugeneParser.java:13015)
	at org.cidarlab.eugene.parser.EugeneParser.atom(EugeneParser.java:12460)
	at org.cidarlab.eugene.parser.EugeneParser.multExpr(EugeneParser.java:11891)
	at org.cidarlab.eugene.parser.EugeneParser.expr(EugeneParser.java:11745)
	at org.cidarlab.eugene.parser.EugeneParser.rhs_assignment(EugeneParser.java:5554)
	at org.cidarlab.eugene.parser.EugeneParser.assignment(EugeneParser.java:5234)
	at org.cidarlab.eugene.parser.EugeneParser.statement(EugeneParser.java:1519)
	at org.cidarlab.eugene.parser.EugeneParser.prog(EugeneParser.java:1205)
	at org.cidarlab.eugene.Eugene.executeScript(Eugene.java:283)
	at org.cidarlab.eugene.units.RulesTest.testSpecificationDocumentExample(RulesTest.java:108)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:606)
	at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:47)
	at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
	at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:44)
	at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
	at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:271)
	at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:70)
	at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:50)
	at org.junit.runners.ParentRunner$3.run(ParentRunner.java:238)
	at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:63)
	at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:236)
	at org.junit.runners.ParentRunner.access$000(ParentRunner.java:53)
	at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:229)
	at org.junit.runners.ParentRunner.run(ParentRunner.java:309)
	at org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:252)
	at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:141)
	at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:112)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:606)
	at org.apache.maven.surefire.util.ReflectionUtils.invokeMethodWithArray(ReflectionUtils.java:189)
	at org.apache.maven.surefire.booter.ProviderFactory$ProviderProxy.invoke(ProviderFactory.java:165)
	at org.apache.maven.surefire.booter.ProviderFactory.invokeProvider(ProviderFactory.java:85)
	at org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:115)
	at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:75)