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update: example DAFNI test and results
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2 files changed

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‎dafni/data/inputs/causal_tests.json

Lines changed: 6 additions & 63 deletions
Original file line numberDiff line numberDiff line change
@@ -1,58 +1,11 @@
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{
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"tests": [
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{
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"name": "max_doses _||_ cum_vaccinations",
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"estimator": "LinearRegressionEstimator",
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"estimate_type": "coefficient",
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"effect": "direct",
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"mutations": [
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"max_doses"
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],
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"expected_effect": {
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"cum_vaccinations": "NoEffect"
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},
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"formula": "cum_vaccinations ~ max_doses",
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"alpha": 0.05,
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"skip": false
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},
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{
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"name": "max_doses _||_ cum_vaccinated",
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"estimator": "LinearRegressionEstimator",
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"estimate_type": "coefficient",
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"effect": "direct",
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"mutations": [
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"max_doses"
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],
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"expected_effect": {
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"cum_vaccinated": "NoEffect"
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},
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"formula": "cum_vaccinated ~ max_doses",
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"alpha": 0.05,
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"skip": false
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},
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{
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"name": "max_doses _||_ cum_infections",
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"estimator": "LinearRegressionEstimator",
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"estimate_type": "coefficient",
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"effect": "direct",
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"mutations": [
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"max_doses"
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],
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"expected_effect": {
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"cum_infections": "NoEffect"
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},
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"formula": "cum_infections ~ max_doses",
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"alpha": 0.05,
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"skip": false
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},
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{
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"name": "vaccine --> cum_vaccinations",
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"estimator": "LinearRegressionEstimator",
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"estimate_type": "coefficient",
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"effect": "direct",
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"mutations": [
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"vaccine"
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],
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"treatment_variable": "vaccine",
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"expected_effect": {
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"cum_vaccinations": "SomeEffect"
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},
@@ -64,9 +17,7 @@
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"estimator": "LinearRegressionEstimator",
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"estimate_type": "coefficient",
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"effect": "direct",
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"mutations": [
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"vaccine"
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],
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"treatment_variable": "vaccine",
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"expected_effect": {
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"cum_vaccinated": "SomeEffect"
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},
@@ -78,9 +29,7 @@
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"estimator": "LinearRegressionEstimator",
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"estimate_type": "coefficient",
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"effect": "direct",
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"mutations": [
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"vaccine"
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],
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"treatment_variable": "vaccine",
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"expected_effect": {
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"cum_infections": "SomeEffect"
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},
@@ -92,9 +41,7 @@
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"estimator": "LinearRegressionEstimator",
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"estimate_type": "coefficient",
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"effect": "direct",
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"mutations": [
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"cum_vaccinations"
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],
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"treatment_variable": "cum_vaccinations",
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"expected_effect": {
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"cum_vaccinated": "NoEffect"
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},
@@ -107,9 +54,7 @@
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"estimator": "LinearRegressionEstimator",
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"estimate_type": "coefficient",
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"effect": "direct",
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"mutations": [
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"cum_vaccinations"
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],
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"treatment_variable": "cum_vaccinations",
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"expected_effect": {
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"cum_infections": "NoEffect"
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},
@@ -122,9 +67,7 @@
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"estimator": "LinearRegressionEstimator",
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"estimate_type": "coefficient",
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"effect": "direct",
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"mutations": [
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"cum_vaccinated"
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],
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"treatment_variable": "cum_vaccinated",
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"expected_effect": {
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"cum_infections": "NoEffect"
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},

‎dafni/data/outputs/causal_tests_results.json

Lines changed: 25 additions & 118 deletions
Original file line numberDiff line numberDiff line change
@@ -1,107 +1,16 @@
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[
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{
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"name": "max_doses _||_ cum_vaccinations",
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"estimate_type": "coefficient",
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"effect": "direct",
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"mutations": [
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"max_doses"
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],
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"expected_effect": {
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"cum_vaccinations": "NoEffect"
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},
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"formula": "cum_vaccinations ~ max_doses",
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"alpha": 0.05,
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"skip": false,
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"failed": true,
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"result": {
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"treatment": "max_doses",
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"outcome": "cum_vaccinations",
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"adjustment_set": [],
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"effect_measure": "coefficient",
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"effect_estimate": {
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"max_doses": 252628.1066666667
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},
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"ci_low": [
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252271.33332001517
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],
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"ci_high": [
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252984.8800133182
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]
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}
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},
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{
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"name": "max_doses _||_ cum_vaccinated",
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"estimate_type": "coefficient",
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"effect": "direct",
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"mutations": [
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"max_doses"
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],
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"expected_effect": {
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"cum_vaccinated": "NoEffect"
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},
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"formula": "cum_vaccinated ~ max_doses",
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"alpha": 0.05,
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"skip": false,
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"failed": true,
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"result": {
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"treatment": "max_doses",
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"outcome": "cum_vaccinated",
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"adjustment_set": [],
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"effect_measure": "coefficient",
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"effect_estimate": {
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"max_doses": 213111.93333333335
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},
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"ci_low": [
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212755.15056812647
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],
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"ci_high": [
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213468.71609854023
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]
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}
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},
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{
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"name": "max_doses _||_ cum_infections",
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"estimate_type": "coefficient",
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"effect": "direct",
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"mutations": [
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"max_doses"
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],
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"expected_effect": {
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"cum_infections": "NoEffect"
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},
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"formula": "cum_infections ~ max_doses",
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"alpha": 0.05,
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"skip": false,
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"failed": true,
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"result": {
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"treatment": "max_doses",
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"outcome": "cum_infections",
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"adjustment_set": [],
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"effect_measure": "coefficient",
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"effect_estimate": {
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"max_doses": 2666.3066666666664
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},
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"ci_low": [
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2619.972040648758
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],
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"ci_high": [
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2712.6412926845746
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]
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}
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},
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{
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"name": "vaccine --> cum_vaccinations",
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"estimate_type": "coefficient",
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"effect": "direct",
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"mutations": [
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"vaccine"
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],
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"treatment_variable": "vaccine",
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"expected_effect": {
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"cum_vaccinations": "SomeEffect"
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},
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"formula": "cum_vaccinations ~ vaccine",
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"alpha": 0.05,
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"skip": false,
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"failed": false,
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"passed": true,
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"result": {
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"treatment": "vaccine",
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"outcome": "cum_vaccinations",
@@ -122,15 +31,14 @@
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"name": "vaccine --> cum_vaccinated",
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"estimate_type": "coefficient",
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"effect": "direct",
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"mutations": [
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"vaccine"
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],
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"treatment_variable": "vaccine",
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"expected_effect": {
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"cum_vaccinated": "SomeEffect"
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},
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"formula": "cum_vaccinated ~ vaccine",
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"alpha": 0.05,
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"skip": false,
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"failed": false,
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"passed": true,
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"result": {
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"treatment": "vaccine",
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"outcome": "cum_vaccinated",
@@ -151,15 +59,14 @@
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"name": "vaccine --> cum_infections",
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"estimate_type": "coefficient",
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"effect": "direct",
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"mutations": [
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"vaccine"
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],
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"treatment_variable": "vaccine",
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"expected_effect": {
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"cum_infections": "SomeEffect"
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},
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"formula": "cum_infections ~ vaccine",
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"alpha": 0.05,
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"skip": false,
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"failed": false,
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"passed": true,
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"result": {
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"treatment": "vaccine",
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"outcome": "cum_infections",
@@ -180,20 +87,20 @@
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"name": "cum_vaccinations _||_ cum_vaccinated | ['vaccine']",
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"estimate_type": "coefficient",
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"effect": "direct",
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"mutations": [
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"cum_vaccinations"
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],
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"treatment_variable": "cum_vaccinations",
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"expected_effect": {
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"cum_vaccinated": "NoEffect"
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},
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"formula": "cum_vaccinated ~ cum_vaccinations + vaccine",
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"alpha": 0.05,
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"skip": false,
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"failed": true,
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"passed": false,
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"result": {
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"treatment": "cum_vaccinations",
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"outcome": "cum_vaccinated",
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"adjustment_set": [],
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"adjustment_set": [
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"vaccine"
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],
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"effect_measure": "coefficient",
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"effect_estimate": {
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"cum_vaccinations": 0.9998656401531605
@@ -210,20 +117,20 @@
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"name": "cum_vaccinations _||_ cum_infections | ['vaccine']",
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"estimate_type": "coefficient",
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"effect": "direct",
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"mutations": [
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"cum_vaccinations"
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],
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"treatment_variable": "cum_vaccinations",
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"expected_effect": {
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"cum_infections": "NoEffect"
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},
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"formula": "cum_infections ~ cum_vaccinations + vaccine",
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"alpha": 0.05,
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"skip": false,
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"failed": false,
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"passed": true,
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"result": {
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"treatment": "cum_vaccinations",
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"outcome": "cum_infections",
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"adjustment_set": [],
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"adjustment_set": [
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"vaccine"
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],
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"effect_measure": "coefficient",
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"effect_estimate": {
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"cum_vaccinations": -0.006416682407515084
@@ -240,20 +147,20 @@
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"name": "cum_vaccinated _||_ cum_infections | ['vaccine']",
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"estimate_type": "coefficient",
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"effect": "direct",
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"mutations": [
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"cum_vaccinated"
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],
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"treatment_variable": "cum_vaccinated",
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"expected_effect": {
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"cum_infections": "NoEffect"
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},
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"formula": "cum_infections ~ cum_vaccinated + vaccine",
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"alpha": 0.05,
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"skip": false,
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"failed": false,
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"passed": true,
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"result": {
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"treatment": "cum_vaccinated",
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"outcome": "cum_infections",
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"adjustment_set": [],
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"adjustment_set": [
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"vaccine"
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],
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"effect_measure": "coefficient",
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"effect_estimate": {
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"cum_vaccinated": -0.006176900588291234
@@ -266,4 +173,4 @@
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]
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}
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}
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]
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]

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