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update installation guide for Server/ Cluster
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doc/source/install_cluster.rst

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@@ -48,7 +48,7 @@ Install environment with Miniconda
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conda env create -f requirements/env_climada.yml --name climada_env
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During the installation process of Miniconda, you are prompted to set the working directory according to your choice.
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During the installation process of Miniconda, you are prompted to set the working directory according to your choice.
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2. **Install dependencies**: Create the virtual environment *climada_env* with climada's dependencies::
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@@ -66,10 +66,10 @@ During the installation process of Miniconda, you are prompted to set the workin
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source deactivate
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If the installation has been successful, an OK will appear at the end of the execution.
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If the installation has been successful, an OK will appear at the end of the execution.
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Warning: Executing the whole test_runner takes pretty long and downloads some files to climada_python/data that you might not need.
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Consider aborting the test once you see first "OK"s in the output.
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Warning: Executing the whole test_runner takes pretty long and downloads some files to climada_python/data that you might not need.
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Consider aborting the test once you see first "OK"s in the output.
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4. **Submit a test BJOB to the queue of the cluster**: Write a shell script that initiates the Python environment climada_env and submit the job::
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bsub -J "test01" -W 1:00 -R "rusage[mem=5120]" -oo logs/test01.txt -eo logs/e_test01.txt < run_climada_python.sh
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Notes:
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Notes:
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- Change the script after echo "python3" to the path of the Python script you want to execute
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- Change the script after echo "python3" to the path of the Python script you want to execute
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- Change the working path to the path you have cloned the climada_python repository to
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- Change the working path to the path you have cloned the climada_python repository to
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- Customise the bsub options accordingly
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- Customise the bsub options accordingly
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