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README.md

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## Introduction **metaTAXONx**
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The 16S pipeline is a best-practice suite for the preprocessing, denoising and annotation of illumina short-read sequencing data obtained via 16S rRNA marker-gene sequencing. The pipeline contains [NF-core modules](https://github.com/nf-core/modules) and other local modules that are in the similar format. It can be runned via both docker and singularity containers.
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This pipeline is a best-practice suite for the pre-processing, denoising, classification and annotation of Illumina short-read sequencing data obtained by 16S rRNA marker-gene sequencing. The pipeline contains [NF-core modules](https://github.com/nf-core/modules) and other local modules that are in the similar format. It can be runned via both docker and singularity containers.
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<p align="center">
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<img src="docs/images/metataxonx_v1.1_drawio.png" alt="workflow" width="90%">
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## Citations
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You can cite the `metataxonx` using the following DOI:
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You can cite the `metataxonx` using the [DOI link](https://doi.org/10.48546/WORKFLOWHUB.WORKFLOW.2054.1)
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An extensive list of references for the tools used by the pipeline can be found in the [`CITATIONS.md`](CITATIONS.md)
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