ffi_qaqc fix (#106)

* Intermediate dir should ALSO be the tempdir

* try() syntax fix

Author: bpbond

R/metadata.R

@@ -36,10 +36,10 @@
 #' # has no match
 #'
 #' # This generates an error because of overlapping timestamps:
-#' \try{
+#' try({
 #' s_t <- c("13:00:00", "13:01:00")
 #' ffi_metadata_match(d_t, s_d, s_t, ol)
-#' }
+#' })
 ffi_metadata_match <- function(data_timestamps,
                                start_dates, start_times,
                                obs_lengths) {

R/qaqc.R

@@ -41,6 +41,7 @@ ffi_qaqc <- function(flux_data,
                             output_file = output_file,
                             output_dir = output_dir,
                             knit_root_dir = output_dir,
+                            intermediates_dir = output_dir,
                             quiet = ffi_isquiet(),
                             params = list(flux_data = tf_flux_data,
                                           group_column = group_column))