[pre-commit.ci] pre-commit autoupdate (#549)

<!--pre-commit.ci start-->
updates:
- [github.com/asottile/pyupgrade: v3.20.0 →
v3.21.0](asottile/pyupgrade@v3.20.0...v3.21.0)
- [github.com/astral-sh/ruff-pre-commit: v0.13.3 →
v0.14.3](astral-sh/ruff-pre-commit@v0.13.3...v0.14.3)
- [github.com/python-jsonschema/check-jsonschema: 0.34.0 →
0.34.1](python-jsonschema/check-jsonschema@0.34.0...0.34.1)
- [github.com/woodruffw/zizmor-pre-commit: v1.14.2 →
v1.16.2](zizmorcore/zizmor-pre-commit@v1.14.2...v1.16.2)
<!--pre-commit.ci end-->

Author: Zeitsperre

.cruft.json

@@ -1,6 +1,6 @@
 {
   "template": "https://github.com/Ouranosinc/cookiecutter-pypackage",
-  "commit": "66708e5e15f00caaaaf1748bf0a7e041bc5c6243",
+  "commit": "273d570f627b0ac0fb07c2457f0072e492bff6d7",
   "context": {
     "cookiecutter": {
       "full_name": "David Huard",
@@ -22,7 +22,7 @@
       "generated_with_cruft": "y",
       "__gh_slug": "https://github.com/CSHS-CWRA/RavenPy",
       "_template": "https://github.com/Ouranosinc/cookiecutter-pypackage",
-      "_commit": "66708e5e15f00caaaaf1748bf0a7e041bc5c6243"
+      "_commit": "273d570f627b0ac0fb07c2457f0072e492bff6d7"
     }
   },
   "directory": null,

.github/labeler.yml

@@ -18,7 +18,7 @@
       - '.yamllint.yml'
       - '.github/workflows/*'
       - 'docs/Makefile'
-      - 'tox.ini'
+      - 'tox.toml'
       - 'CI/**/*'
       - 'Makefile'
 # label 'docs' all documentation-related steps and files

.github/workflows/bump-version.yml

@@ -32,7 +32,7 @@ on:
       - environment-dev.yml
       - pyproject.toml
       - tests/**.py
-      - tox.ini
+      - tox.toml
       - src/ravenpy/__init__.py
   workflow_dispatch:
 
@@ -45,6 +45,9 @@ jobs:
     permissions:
       actions: read
       contents: write
+    strategy:
+      matrix:
+        python-version: [ "3.13" ]
     steps:
       - name: Harden Runner
         uses: step-security/harden-runner@f4a75cfd619ee5ce8d5b864b0d183aff3c69b55a # v2.13.1
@@ -65,7 +68,7 @@ jobs:
       - name: Set up Python3
         uses: actions/setup-python@e797f83bcb11b83ae66e0230d6156d7c80228e7c # v6.0.0
         with:
-          python-version: "3.x"
+          python-version: ${{ matrix.python-version }}
 
       - name: Config Commit Bot
         run: |

.github/workflows/main.yml

@@ -20,6 +20,9 @@ jobs:
   lint:
     name: Code linting
     runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: [ "3.13" ]
     steps:
       - name: Harden Runner
         uses: step-security/harden-runner@f4a75cfd619ee5ce8d5b864b0d183aff3c69b55a # v2.13.1
@@ -37,7 +40,7 @@ jobs:
       - name: Set up Python${{ matrix.python-version }}
         uses: actions/setup-python@e797f83bcb11b83ae66e0230d6156d7c80228e7c # v6.0.0
         with:
-          python-version: "3.x"
+          python-version: ${{ matrix.python-version }}
           cache: pip
       - name: Install CI libraries
         run: |
@@ -47,7 +50,7 @@ jobs:
         with:
           path: |
             .tox
-          key: ${{ hashFiles('pyproject.toml', 'tox.ini') }}-lint
+          key: ${{ hashFiles('pyproject.toml', 'tox.toml') }}-lint
       - name: Run linting suite
         run: |
           python -m tox -e lint
@@ -61,11 +64,9 @@ jobs:
       matrix:
         os: [ 'ubuntu-latest', "macos-latest" ]
         python-version: [ "3.11", "3.12", "3.13" ]
-        tox-env: [ 'false' ]
         include:
           - os: 'ubuntu-latest'
             python-version: '3.10'
-            tox-env: 'py3.10-coverage-upstream'
     steps:
       - name: Harden Runner
         uses: step-security/harden-runner@f4a75cfd619ee5ce8d5b864b0d183aff3c69b55a # v2.13.1
@@ -82,17 +83,17 @@ jobs:
           python-version: ${{ matrix.python-version }}
           cache: pip
 
-      - name: Install GDAL + Set GDAL_VERSION (Ubuntu)
+      - name: Install GDAL/HDF5 + Set GDAL_VERSION (Ubuntu)
         if: matrix.os == 'ubuntu-latest'
         run: |
           sudo apt-get update
-          sudo apt-get install libgdal-dev
+          sudo apt-get install libgdal-dev libhdf5-dev
           echo "GDAL_VERSION=$(gdal-config --version)" >> $GITHUB_ENV
-      - name: Install GDAL (macOS)
+      - name: Install GDAL/HDF5 (macOS)
         if: matrix.os == 'macos-latest'
         uses: tecolicom/actions-use-homebrew-tools@b9c066b79607fa3d71e0be05d7003bb75fd9ff34 # v1.3
         with:
-          tools: gdal
+          tools: gdal hdf5
           cache: "yes"
       - name: Set GDAL_VERSION (macOS)
         if: matrix.os == 'macos-latest'
@@ -120,22 +121,19 @@ jobs:
             ~/.cache/raven-testdata
           key: ${{ hashFiles('src/ravenpy/testing/registry.txt') }}-${{ env.RAVEN_TESTDATA_BRANCH }}-${{ matrix.os }}
 
-      - name: Test with tox and report coverage
+      - name: Test with tox
         run: |
-          if [ "${{ matrix.tox-env }}" != "false" ]; then
-            python3 -m tox -e ${{ matrix.tox-env }}-prefetch
-          elif [ "${{ matrix.python-version }}" != "3.13" ]; then
-            python3 -m tox -e py${{ matrix.python-version }}-prefetch-coverage
-          else
-            python3 -m tox -e py${{ matrix.python-version }}-prefetch
-          fi
+            python3 -m tox
         env:
-          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-          COVERALLS_FLAG_NAME: run-Python${{ matrix.python-version }}-${{ matrix.os }}
-          COVERALLS_PARALLEL: true
-          COVERALLS_SERVICE_NAME: github
+          TOX_GH_MAJOR_MINOR: ${{ matrix.python-version }}
           UPSTREAM_BRANCH: ${{ matrix.upstream-branch }}
 
+      - name: Report Coverage
+        uses: coverallsapp/github-action@648a8eb78e6d50909eff900e4ec85cab4524a45b # v2.3.6
+        with:
+          flag-name: run-${{ matrix.python-version }}-${{ matrix.os }}-pypi
+          parallel: true
+
   conda:
     name: Test with Python${{ matrix.python-version }} (Anaconda, ${{ matrix.os }})
     needs: lint

.github/workflows/publish-pypi.yml

@@ -16,6 +16,9 @@ jobs:
       # IMPORTANT: this permission is mandatory for trusted publishing
       id-token: write
     runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: [ "3.13" ]
     steps:
       - name: Harden Runner
         uses: step-security/harden-runner@f4a75cfd619ee5ce8d5b864b0d183aff3c69b55a # v2.13.1
@@ -35,10 +38,10 @@ jobs:
         with:
           persist-credentials: false
 
-      - name: Set up Python3
+      - name: Set up Python${{ matrix.python-version }}
         uses: actions/setup-python@e797f83bcb11b83ae66e0230d6156d7c80228e7c # v6.0.0
         with:
-          python-version: "3.x"
+          python-version: ${{ matrix.python-version }}
 
       - name: Install CI libraries
         run: |

.github/workflows/tag-testpypi.yml

@@ -44,6 +44,9 @@ jobs:
       # IMPORTANT: this permission is mandatory for trusted publishing
       id-token: write
     runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: [ "3.13" ]
     steps:
       - name: Harden Runner
         uses: step-security/harden-runner@f4a75cfd619ee5ce8d5b864b0d183aff3c69b55a # v2.13.1
@@ -63,10 +66,10 @@ jobs:
         with:
           persist-credentials: false
 
-      - name: Set up Python3
+      - name: Set up Python${{ matrix.python-version }}
         uses: actions/setup-python@e797f83bcb11b83ae66e0230d6156d7c80228e7c # v6.0.0
         with:
-          python-version: "3.x"
+          python-version: ${{ matrix.python-version }}
 
       - name: Install CI libraries
         run: |

.pre-commit-config.yaml

@@ -3,7 +3,7 @@ default_language_version:
 
 repos:
   - repo: https://github.com/asottile/pyupgrade
-    rev: v3.20.0
+    rev: v3.21.0
     hooks:
       - id: pyupgrade
         args: [ '--py39-plus' ]
@@ -49,7 +49,7 @@ repos:
       - id: rst-inline-touching-normal
       - id: text-unicode-replacement-char
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.13.3
+    rev: v0.14.3
     hooks:
       - id: ruff-check
         args: [ '--fix', '--show-fixes' ]
@@ -58,7 +58,7 @@ repos:
     rev: 7.3.0
     hooks:
       - id: flake8
-        additional_dependencies: [ 'flake8-rst-docstrings==0.3.1' ]
+        additional_dependencies: [ 'flake8-rst-docstrings==0.4.0' ]
         args: [ '--config=.flake8' ]
   - repo: https://github.com/jendrikseipp/vulture
     rev: v2.14
@@ -92,12 +92,12 @@ repos:
       - id: numpydoc-validation
         exclude: "^docs/|^tests/"
   - repo: https://github.com/python-jsonschema/check-jsonschema
-    rev: 0.34.0
+    rev: 0.34.1
     hooks:
       - id: check-github-workflows
       - id: check-readthedocs
   - repo: https://github.com/woodruffw/zizmor-pre-commit
-    rev: v1.14.2
+    rev: v1.16.2
     hooks:
       - id: zizmor
         args: [ '--config=.zizmor.yml' ]

pyproject.toml

@@ -69,7 +69,7 @@ dev = [
   "coverage >=7.5.0",
   "filelock >=3.14.0",
   "flake8 >=7.3.0",
-  "flake8-rst-docstrings >=0.3.1",
+  "flake8-rst-docstrings >=0.4.0",
   "flit >=3.11.0,<4.0",
   "holoviews",
   "hvplot",
@@ -83,7 +83,8 @@ dev = [
   "pytest >=8.3.2",
   "pytest-cov >=5.0.0",
   "pytest-xdist >=3.2.0",
-  "ruff >=0.13.3",
+  "requests >=2.32.2",
+  "ruff >=0.14.3",
   "tox >=4.30.3",
   "vulture >=2.14",
   "watchdog >=4.0.0"
@@ -277,7 +278,7 @@ include = [
   "setup.cfg",
   "tests/*.py",
   "tests/test.cfg",
-  "tox.ini"
+  "tox.toml"
 ]
 exclude = [
   "**/*.py[co]",

tests/test_geoserver.py

@@ -5,6 +5,7 @@
 
 import numpy as np
 import pytest
+from requests.exceptions import HTTPError
 
 
 @pytest.mark.online
@@ -152,7 +153,9 @@ def test_get_feature_attributes_wfs(self):
         assert gdf.STATE_NAME.unique() == "Nevada"
 
 
+# FIXME: Something strange is going on with GitHub Actions and PAVICS Geoserver access. Investigate.
 @pytest.mark.online
+@pytest.mark.xfail(HTTPError, reason="Geoserver WCS seems to be inaccessible from GitHub.", strict=False)
 class TestWCS:
     io = pytest.importorskip("ravenpy.utilities.io")
     geoserver = pytest.importorskip("ravenpy.utilities.geoserver")