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In order to setup the website on a new VM / Droplet, you can simply copy the contents from the fresh_setup.sh script, then run it. It will take care of installing git, all the software, and starting the website.
However, there are a few manual configurations you must do:
Setup the firewall to only allow incoming traffic through the following ports: 22 (ssh), 80 (http), and 443 (https).
certbot configuration. See the comments in fresh_setup.sh or public documentation for how to set this up.