Merge pull request #1453 from CamDavidsonPilon/v0.27.2

0.27.2

Author: CamDavidsonPilon

CHANGELOG.md

@@ -1,6 +1,12 @@
 ## Changelog
 
-#### 0.27.1 - 2022-03-15
+#### 0.27.2 - 2022-09-07
+
+##### Bug fixes
+ - Fixed issue in add_at_risk_table when there were very late entries.
+
+
+#### 0.27.1 - 2022-06-25
 
 ##### New features
  - all `fit_` methods now accept a `fit_options` dict that allows one to pass kwargs to the underlying fitting algorithm.
@@ -10,7 +16,7 @@
  - `step_size` is removed from Cox models `fit`. See `fit_options` above.
 
 ##### Bug fixes
- - fixed Cox models when "trival" matrix was passed in (one with no covariates)
+ - fixed Cox models when "trivial" matrix was passed in (one with no covariates)
 
 #### 0.27.0 - 2022-03-15
 

lifelines/fitters/__init__.py

@@ -1278,9 +1278,7 @@ def _compute_central_values_of_raw_training_data(self, df, strata=None, name="ba
             return v
 
         else:
-            from distutils.version import LooseVersion
-
-            if LooseVersion(pd.__version__) >= "1.1.0":
+            if pd.__version__ >= "1.1.0":
                 # silence deprecation warning
                 describe_kwarg = {"datetime_is_numeric": True}
             else:

lifelines/fitters/coxph_fitter.py

@@ -1621,7 +1621,7 @@ def _get_efron_values_single(
         Calculates the first and second order vector differentials, with respect to beta.
         Note that X, T, E are assumed to be sorted on T!
 
-        A good explanation for Efron. Consider three of five subjects who fail at the time.
+        A good explanation for Efron. Consider three of five subjects who fail at the same time.
         As it is not known a priori that who is the first to fail, so one-third of
         (φ1 + φ2 + φ3) is adjusted from sum_j^{5} φj after one fails. Similarly two-third
         of (φ1 + φ2 + φ3) is adjusted after first two individuals fail, etc.

lifelines/plotting.py

@@ -504,12 +504,16 @@ def add_at_risk_counts(
             else:
                 event_table_slice = f.event_table.assign(at_risk=lambda x: x.at_risk - x.removed)
 
-            event_table_slice = (
-                event_table_slice.loc[:tick, ["at_risk", "censored", "observed"]]
-                .agg({"at_risk": lambda x: x.tail(1).values, "censored": "sum", "observed": "sum"})  # see #1385
-                .rename({"at_risk": "At risk", "censored": "Censored", "observed": "Events"})
-            )
-            counts.extend([int(c) for c in event_table_slice.loc[rows_to_show]])
+            if not event_table_slice.loc[:tick].empty:
+                event_table_slice = (
+                    event_table_slice.loc[:tick, ["at_risk", "censored", "observed"]]
+                    .agg({"at_risk": lambda x: x.tail(1).values, "censored": "sum", "observed": "sum"})  # see #1385
+                    .rename({"at_risk": "At risk", "censored": "Censored", "observed": "Events"})
+                    .fillna(0)
+                )
+                counts.extend([int(c) for c in event_table_slice.loc[rows_to_show]])
+            else:
+                counts.extend([0 for _ in range(n_rows)])
 
         if n_rows > 1:
             if tick == ax2.get_xticks()[0]:

lifelines/version.py

@@ -1,4 +1,4 @@
 # -*- coding: utf-8 -*-
 from __future__ import unicode_literals
 
-__version__ = "0.27.1"
+__version__ = "0.27.2"