Skip to content

CellProfiler Analyst Developer's version installation for Mac

alisonkozol edited this page Nov 3, 2015 · 30 revisions

CPA developer's version used to require CP to be installed, but it should be independent with the javabridge, etc now factored out (afaik). Nevertheless, these notes are using my Mac (10.9) which already had CP developer's version working (May 2014).

Then from within virtualenv (following instructions to start virtualenv here) pip install javabridge (pip install python-bioformats)

Run CPA with (still from within virtualenv)

pythonw32 ./<YOUR CPA GITHUB DIR>/CellProfiler-Analyst.py

Clone this wiki locally