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CellProfiler Analyst Developer's version installation for Mac

David Logan edited this page May 13, 2014 · 30 revisions

CPA developer's version used to require CP to be installed, but it should be independent with the javabridge, etc now factored out (afaik). Nevertheless, these notes are using my Mac (10.9) which already had CP develeoper's version working (May 2014).

Then from within virtualenv (following instructions here)

  • pip install javabridge
  • pip install python-bioformats
  • pip install verlib
  • pip install mock (not sure if this is strictly necessary, but it was also listed in requirements.txt here so I pip-installed it)

Run CPA with (still from within virtualenv)

pythonw32 ./<YOUR CPA GITHUB DIR>/CellProfiler-Analyst.py

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