HTSanalyzeR2/NAMESPACE at master · CityUHK-CompBio/HTSanalyzeR2 · GitHub

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# Generated by roxygen2: do not edit by hand

export(GOGeneSets)
export(GSCA)
export(GSCABatch)
export(HTSanalyzeR2Pipe)
export(HTSanalyzeR4MAGeCK)
export(KeggGeneSets)
export(MSigDBGeneSets)
export(NWA)
export(NWABatch)
export(analyzeGscaTS)
export(analyzeNwaTS)
export(annotationConvertor)
export(appendGSTermsTS)
export(cellHTS2OutputStatTests)
export(duplicateRemover)
export(interactomeNwaTS)
export(preprocessGscaTS)
export(preprocessNwaTS)
export(reportAll)
exportMethods(analyze)
exportMethods(appendGSTerms)
exportMethods(extractEnrichMap)
exportMethods(extractSubNet)
exportMethods(getInteractome)
exportMethods(getPara)
exportMethods(getResult)
exportMethods(getSummary)
exportMethods(getTopGeneSets)
exportMethods(interactome)
exportMethods(plotGSEA)
exportMethods(preprocess)
exportMethods(report)
exportMethods(summarize)
exportMethods(viewEnrichMap)
exportMethods(viewGSEA)
exportMethods(viewSubNet)
import(DT)
import(GO.db)
import(colourpicker)
import(foreach)
import(graphics)
importFrom(AnnotationDbi,GOID)
importFrom(AnnotationDbi,Ontology)
importFrom(AnnotationDbi,as.list)
importFrom(AnnotationDbi,columns)
importFrom(AnnotationDbi,mapIds)
importFrom(BioNet,fitBumModel)
importFrom(BioNet,makeNetwork)
importFrom(BioNet,runFastHeinz)
importFrom(BioNet,scoreNodes)
importFrom(BiocParallel,bplapply)
importFrom(KEGGREST,keggConv)
importFrom(KEGGREST,keggLink)
importFrom(KEGGREST,keggList)
importFrom(RankProd,RP)
importFrom(Rcpp,sourceCpp)
importFrom(cellHTS2,Data)
importFrom(data.table,fread)
importFrom(fgsea,fgsea)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(grDevices,png)
importFrom(htmlwidgets,createWidget)
importFrom(htmlwidgets,shinyRenderWidget)
importFrom(htmlwidgets,shinyWidgetOutput)
importFrom(igraph,"E<-")
importFrom(igraph,"V<-")
importFrom(igraph,E)
importFrom(igraph,V)
importFrom(igraph,as_data_frame)
importFrom(igraph,ecount)
importFrom(igraph,graph.adjacency)
importFrom(igraph,make_empty_graph)
importFrom(igraph,set_vertex_attr)
importFrom(igraph,simplify)
importFrom(igraph,vcount)
importFrom(igraph,vertex_attr)
importFrom(methods,is)
importFrom(msigdbr,msigdbr)
importFrom(shiny,tagList)
importFrom(shinydashboard,dashboardPage)
importFrom(stats,median)
importFrom(stats,p.adjust)
importFrom(stats,t.test)
importFrom(stats,wilcox.test)
importFrom(stringr,str_replace)
importFrom(stringr,str_sub)
importFrom(utils,download.file)
importFrom(utils,getFromNamespace)
importFrom(utils,installed.packages)
importFrom(utils,modifyList)
importFrom(utils,unzip)
useDynLib(HTSanalyzeR2)