Bump to 0.28.5

Author: Sbozzolo

.buildkite/Manifest-v1.11.toml

@@ -2,12 +2,12 @@
 
 julia_version = "1.11.3"
 manifest_format = "2.0"
-project_hash = "435748ba4bd3e84a898785b2d03f015c42fbae0c"
+project_hash = "04945e2a7116cfacb2d57340f477dbe23e208227"
 
 [[deps.ADTypes]]
-git-tree-sha1 = "e1ce448a0d7f88168ffe2eeac4549c32d45a42d1"
+git-tree-sha1 = "fb97701c117c8162e84dfcf80215caa904aef44f"
 uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b"
-version = "1.12.1"
+version = "1.13.0"
 weakdeps = ["ChainRulesCore", "ConstructionBase", "EnzymeCore"]
 
     [deps.ADTypes.extensions]
@@ -195,9 +195,9 @@ version = "0.5.0"
 
 [[deps.BandedMatrices]]
 deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"]
-git-tree-sha1 = "fc8d8197de6c69ad6fd01c255b6b386ca8199331"
+git-tree-sha1 = "bbc6688495b031d84610e227d46c35e17fdde5f5"
 uuid = "aae01518-5342-5314-be14-df237901396f"
-version = "1.9.0"
+version = "1.9.1"
 weakdeps = ["SparseArrays"]
 
     [deps.BandedMatrices.extensions]
@@ -221,9 +221,9 @@ version = "0.1.6"
 
 [[deps.BlockArrays]]
 deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra"]
-git-tree-sha1 = "b406207917260364a2e0287b42e4c6772cb9db88"
+git-tree-sha1 = "1ded9033f6067573314b27cd4b9ff01a1ba92cff"
 uuid = "8e7c35d0-a365-5155-bbbb-fb81a777f24e"
-version = "1.3.0"
+version = "1.4.0"
 weakdeps = ["BandedMatrices"]
 
     [deps.BlockArrays.extensions]
@@ -350,7 +350,7 @@ version = "0.5.12"
 deps = ["ArgParse", "Artifacts", "AtmosphericProfilesLibrary", "ClimaComms", "ClimaCore", "ClimaDiagnostics", "ClimaParams", "ClimaTimeSteppers", "ClimaUtilities", "CloudMicrophysics", "Dates", "DiffEqBase", "FastGaussQuadrature", "Insolation", "Interpolations", "LazyArtifacts", "LazyBroadcast", "LinearAlgebra", "Logging", "NCDatasets", "NVTX", "NullBroadcasts", "RRTMGP", "Random", "SciMLBase", "StaticArrays", "Statistics", "SurfaceFluxes", "Thermodynamics", "UnrolledUtilities", "YAML"]
 path = ".."
 uuid = "b2c96348-7fb7-4fe0-8da9-78d88439e717"
-version = "0.28.4"
+version = "0.28.5"
 
 [[deps.ClimaComms]]
 deps = ["Adapt", "Logging", "LoggingExtras"]
@@ -461,9 +461,9 @@ version = "0.4.1"
 
 [[deps.ColorSchemes]]
 deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"]
-git-tree-sha1 = "26ec26c98ae1453c692efded2b17e15125a5bea1"
+git-tree-sha1 = "403f2d8e209681fcbd9468a8514efff3ea08452e"
 uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4"
-version = "3.28.0"
+version = "3.29.0"
 
 [[deps.ColorTypes]]
 deps = ["FixedPointNumbers", "Random"]
@@ -616,16 +616,18 @@ uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab"
 version = "1.9.1"
 
 [[deps.DiffEqBase]]
-deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "Statistics", "TruncatedStacktraces"]
-git-tree-sha1 = "b1e23a7fe7371934d9d538114a7e7166c1d09e05"
+deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "Statistics", "TruncatedStacktraces"]
+git-tree-sha1 = "7df50fae7bef8d958a6d4c6ed5a7c3626e419543"
 uuid = "2b5f629d-d688-5b77-993f-72d75c75574e"
-version = "6.161.0"
+version = "6.162.2"
 
     [deps.DiffEqBase.extensions]
     DiffEqBaseCUDAExt = "CUDA"
     DiffEqBaseChainRulesCoreExt = "ChainRulesCore"
     DiffEqBaseDistributionsExt = "Distributions"
     DiffEqBaseEnzymeExt = ["ChainRulesCore", "Enzyme"]
+    DiffEqBaseForwardDiffExt = ["ForwardDiff"]
+    DiffEqBaseGTPSAExt = "GTPSA"
     DiffEqBaseGeneralizedGeneratedExt = "GeneralizedGenerated"
     DiffEqBaseMPIExt = "MPI"
     DiffEqBaseMeasurementsExt = "Measurements"
@@ -640,6 +642,8 @@ version = "6.161.0"
     ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
     Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f"
     Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9"
+    ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210"
+    GTPSA = "b27dd330-f138-47c5-815b-40db9dd9b6e8"
     GeneralizedGenerated = "6b9d7cbe-bcb9-11e9-073f-15a7a543e2eb"
     MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195"
     Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7"
@@ -663,9 +667,9 @@ version = "1.15.1"
 
 [[deps.DiskArrays]]
 deps = ["LRUCache", "Mmap", "OffsetArrays"]
-git-tree-sha1 = "4687e77a603fcd86738a92758086717cd06cdaae"
+git-tree-sha1 = "64650943240652ebedc6c43d03cccda247b327a3"
 uuid = "3c3547ce-8d99-4f5e-a174-61eb10b00ae3"
-version = "0.4.8"
+version = "0.4.9"
 
 [[deps.Distributed]]
 deps = ["Random", "Serialization", "Sockets"]
@@ -732,9 +736,9 @@ version = "2.2.5"
 
 [[deps.Expat_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "e51db81749b0777b2147fbe7b783ee79045b8e99"
+git-tree-sha1 = "d55dffd9ae73ff72f1c0482454dcf2ec6c6c4a63"
 uuid = "2e619515-83b5-522b-bb60-26c02a35a201"
-version = "2.6.4+3"
+version = "2.6.5+0"
 
 [[deps.ExprTools]]
 git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec"
@@ -834,9 +838,9 @@ version = "0.8.3"
 
 [[deps.FilePathsBase]]
 deps = ["Compat", "Dates"]
-git-tree-sha1 = "7878ff7172a8e6beedd1dea14bd27c3c6340d361"
+git-tree-sha1 = "2ec417fc319faa2d768621085cc1feebbdee686b"
 uuid = "48062228-2e41-5def-b9a4-89aafe57970f"
-version = "0.9.22"
+version = "0.9.23"
 weakdeps = ["Mmap", "Test"]
 
     [deps.FilePathsBase.extensions]
@@ -934,9 +938,9 @@ version = "1.11.0"
 
 [[deps.GPUArrays]]
 deps = ["Adapt", "GPUArraysCore", "KernelAbstractions", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "ScopedValues", "Serialization", "Statistics"]
-git-tree-sha1 = "0ef97e93edced3d0e713f4cfd031cc9020e022b0"
+git-tree-sha1 = "eea7b3a1964b4de269bb380462a9da604be7fcdb"
 uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7"
-version = "11.2.1"
+version = "11.2.2"
 
 [[deps.GPUArraysCore]]
 deps = ["Adapt"]
@@ -946,9 +950,9 @@ version = "0.2.0"
 
 [[deps.GPUCompiler]]
 deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "PrecompileTools", "Preferences", "Scratch", "Serialization", "TOML", "TimerOutputs", "UUIDs"]
-git-tree-sha1 = "8e30cd0b1934f03dd925416970061c1014c6686f"
+git-tree-sha1 = "f38693a56bffbf30f063568cb18fabda7b9d0516"
 uuid = "61eb1bfa-7361-4325-ad38-22787b887f55"
-version = "1.1.0"
+version = "1.1.1"
 
 [[deps.GaussQuadrature]]
 deps = ["SpecialFunctions"]
@@ -1213,14 +1217,14 @@ uuid = "82899510-4779-5014-852e-03e436cf321d"
 version = "1.0.0"
 
 [[deps.JET]]
-deps = ["CodeTracking", "InteractiveUtils", "JuliaInterpreter", "LoweredCodeUtils", "MacroTools", "Pkg", "PrecompileTools", "Preferences", "Test"]
-git-tree-sha1 = "24bdbf3ef611b69d1f5ef9331e69b6007152989e"
+deps = ["CodeTracking", "InteractiveUtils", "JuliaInterpreter", "JuliaSyntax", "LoweredCodeUtils", "MacroTools", "Pkg", "PrecompileTools", "Preferences", "Test"]
+git-tree-sha1 = "a453c9b3320dd73f5b05e8882446b6051cb254c4"
 uuid = "c3a54625-cd67-489e-a8e7-0a5a0ff4e31b"
-version = "0.9.14"
+version = "0.9.18"
 
     [deps.JET.extensions]
     JETCthulhuExt = "Cthulhu"
-    ReviseExt = "Revise"
+    JETReviseExt = "Revise"
 
     [deps.JET.weakdeps]
     Cthulhu = "f68482b8-f384-11e8-15f7-abe071a5a75f"
@@ -1258,16 +1262,21 @@ version = "3.1.1+0"
 
 [[deps.JuliaInterpreter]]
 deps = ["CodeTracking", "InteractiveUtils", "Random", "UUIDs"]
-git-tree-sha1 = "a729439c18f7112cbbd9fcdc1771ecc7f071df6a"
+git-tree-sha1 = "4bf4b400a8234cff0f177da4a160a90296159ce9"
 uuid = "aa1ae85d-cabe-5617-a682-6adf51b2e16a"
-version = "0.9.39"
+version = "0.9.41"
 
 [[deps.JuliaNVTXCallbacks_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
 git-tree-sha1 = "af433a10f3942e882d3c671aacb203e006a5808f"
 uuid = "9c1d0b0a-7046-5b2e-a33f-ea22f176ac7e"
 version = "0.2.1+0"
 
+[[deps.JuliaSyntax]]
+git-tree-sha1 = "937da4713526b96ac9a178e2035019d3b78ead4a"
+uuid = "70703baa-626e-46a2-a12c-08ffd08c73b4"
+version = "0.4.10"
+
 [[deps.KernelAbstractions]]
 deps = ["Adapt", "Atomix", "InteractiveUtils", "MacroTools", "PrecompileTools", "Requires", "StaticArrays", "UUIDs"]
 git-tree-sha1 = "d5bc0b079382e89bfa91433639bc74b9f9e17ae7"
@@ -1769,9 +1778,9 @@ version = "5.0.6+0"
 
 [[deps.OpenSSL_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "7493f61f55a6cce7325f197443aa80d32554ba10"
+git-tree-sha1 = "a9697f1d06cc3eb3fb3ad49cc67f2cfabaac31ea"
 uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95"
-version = "3.0.15+3"
+version = "3.0.16+0"
 
 [[deps.OpenSpecFun_jll]]
 deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"]
@@ -1899,18 +1908,6 @@ git-tree-sha1 = "7dbfb7f61c3aa5def7b7dad3fa344c1c2858a83b"
 uuid = "9c32591e-4766-534b-9725-b71a8799265b"
 version = "24.6.0+0"
 
-[[deps.PreallocationTools]]
-deps = ["Adapt", "ArrayInterface", "ForwardDiff"]
-git-tree-sha1 = "6c62ce45f268f3f958821a1e5192cf91c75ae89c"
-uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46"
-version = "0.4.24"
-
-    [deps.PreallocationTools.extensions]
-    PreallocationToolsReverseDiffExt = "ReverseDiff"
-
-    [deps.PreallocationTools.weakdeps]
-    ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267"
-
 [[deps.PrecompileCI]]
 deps = ["ClimaAtmos", "ClimaComms", "ClimaCore", "ClimaParams", "PrecompileTools"]
 path = "PrecompileCI"
@@ -1969,9 +1966,9 @@ version = "1.0.1"
 
 [[deps.QuadGK]]
 deps = ["DataStructures", "LinearAlgebra"]
-git-tree-sha1 = "cda3b045cf9ef07a08ad46731f5a3165e56cf3da"
+git-tree-sha1 = "9da16da70037ba9d701192e27befedefb91ec284"
 uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc"
-version = "2.11.1"
+version = "2.11.2"
 
     [deps.QuadGK.extensions]
     QuadGKEnzymeExt = "Enzyme"
@@ -2035,9 +2032,9 @@ version = "1.3.4"
 
 [[deps.RecursiveArrayTools]]
 deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"]
-git-tree-sha1 = "ea6ad53c168c7c1c2e8f870aefda269692a8a91f"
+git-tree-sha1 = "fe9d37a17ab4d41a98951332ee8067f8dca8c4c2"
 uuid = "731186ca-8d62-57ce-b412-fbd966d074cd"
-version = "3.28.0"
+version = "3.29.0"
 
     [deps.RecursiveArrayTools.extensions]
     RecursiveArrayToolsFastBroadcastExt = "FastBroadcast"
@@ -2124,9 +2121,9 @@ version = "0.1.0"
 
 [[deps.SciMLBase]]
 deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "Expronicon", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"]
-git-tree-sha1 = "fcb73c66a5071d4d026aa84f9950a4d1f0dadf33"
+git-tree-sha1 = "70243d458e69c82d3b928196c9feddb9af857c13"
 uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
-version = "2.72.1"
+version = "2.73.0"
 
     [deps.SciMLBase.extensions]
     SciMLBaseChainRulesCoreExt = "ChainRulesCore"
@@ -2312,9 +2309,9 @@ weakdeps = ["OffsetArrays", "StaticArrays"]
 
 [[deps.StaticArrays]]
 deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"]
-git-tree-sha1 = "02c8bd479d26dbeff8a7eb1d77edfc10dacabc01"
+git-tree-sha1 = "e3be13f448a43610f978d29b7adf78c76022467a"
 uuid = "90137ffa-7385-5640-81b9-e52037218182"
-version = "1.9.11"
+version = "1.9.12"
 weakdeps = ["ChainRulesCore", "Statistics"]
 
     [deps.StaticArrays.extensions]
@@ -2373,9 +2370,9 @@ version = "0.3.7"
 
 [[deps.StringManipulation]]
 deps = ["PrecompileTools"]
-git-tree-sha1 = "a6b1675a536c5ad1a60e5a5153e1fee12eb146e3"
+git-tree-sha1 = "725421ae8e530ec29bcbdddbe91ff8053421d023"
 uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e"
-version = "0.4.0"
+version = "0.4.1"
 
 [[deps.StructArrays]]
 deps = ["ConstructionBase", "DataAPI", "Tables"]
@@ -2596,9 +2593,9 @@ version = "1.0.0"
 
 [[deps.XML2_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"]
-git-tree-sha1 = "a2fccc6559132927d4c5dc183e3e01048c6dcbd6"
+git-tree-sha1 = "ee6f41aac16f6c9a8cab34e2f7a200418b1cc1e3"
 uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a"
-version = "2.13.5+0"
+version = "2.13.6+0"
 
 [[deps.XSLT_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "XML2_jll", "Zlib_jll"]
@@ -2744,9 +2741,9 @@ version = "1.5.0+0"
 
 [[deps.libzip_jll]]
 deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "OpenSSL_jll", "XZ_jll", "Zlib_jll", "Zstd_jll"]
-git-tree-sha1 = "e797fa066eba69f4c0585ffbd81bc780b5118ce2"
+git-tree-sha1 = "86addc139bca85fdf9e7741e10977c45785727b7"
 uuid = "337d8026-41b4-5cde-a456-74a10e5b31d1"
-version = "1.11.2+2"
+version = "1.11.3+0"
 
 [[deps.nghttp2_jll]]
 deps = ["Artifacts", "Libdl"]

NEWS.md

@@ -1,8 +1,9 @@
 ClimaAtmos.jl Release Notes
 ============================
 
-Main
+v0.28.5
 -------
+
 ### Features
 
 ### Update default configuration to use deep-atmosphere eqns, fix diagnostic bug
@@ -23,7 +24,6 @@ PR [3555](https://github.com/CliMA/ClimaAtmos.jl/pull/3555)
 The option `FriersonDiffusion` is removed from `vert_diff` config. Use `DecayWithHeightDiffusion` instead.
 PR [3592](https://github.com/CliMA/ClimaAtmos.jl/pull/3592)
 
-
 v0.28.4
 -------
 ### Development

Project.toml

@@ -1,7 +1,7 @@
 name = "ClimaAtmos"
 uuid = "b2c96348-7fb7-4fe0-8da9-78d88439e717"
 authors = ["Climate Modeling Alliance"]
-version = "0.28.4"
+version = "0.28.5"
 
 [deps]
 ArgParse = "c7e460c6-2fb9-53a9-8c5b-16f535851c63"