Fluxnet plotting (#1276)

* Fluxnet plotting

Author: kmdeck

.buildkite/Manifest-v1.11.toml

@@ -91,9 +91,9 @@ version = "0.4.2"
 
 [[deps.Aqua]]
 deps = ["Compat", "Pkg", "Test"]
-git-tree-sha1 = "622d6ee5f093951e2e08ed88aa3fcdebec091bcf"
+git-tree-sha1 = "d57fd255a8932b6509baf43284c416fc44d0b903"
 uuid = "4c88cf16-eb10-579e-8560-4a9242c79595"
-version = "0.8.13"
+version = "0.8.14"
 
 [[deps.ArgCheck]]
 git-tree-sha1 = "f9e9a66c9b7be1ad7372bbd9b062d9230c30c5ce"
@@ -444,9 +444,9 @@ version = "0.1.2"
 
 [[deps.ClimaComms]]
 deps = ["Adapt", "Logging", "LoggingExtras"]
-git-tree-sha1 = "75b9d1a3b4e3efa2cbbae2eb7b52f14c0b38ccf0"
+git-tree-sha1 = "f3961fa943c1bbbc376af910cb98db67084dc642"
 uuid = "3a4d1b5c-c61d-41fd-a00a-5873ba7a1b0d"
-version = "0.6.8"
+version = "0.6.9"
 weakdeps = ["CUDA", "MPI"]
 
     [deps.ClimaComms.extensions]
@@ -455,9 +455,9 @@ weakdeps = ["CUDA", "MPI"]
 
 [[deps.ClimaCore]]
 deps = ["Adapt", "BandedMatrices", "BlockArrays", "ClimaComms", "CubedSphere", "DataStructures", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "KrylovKit", "LazyBroadcast", "LinearAlgebra", "MultiBroadcastFusion", "NVTX", "PkgVersion", "RecursiveArrayTools", "RootSolvers", "SparseArrays", "StaticArrays", "Statistics", "UnrolledUtilities"]
-git-tree-sha1 = "a273452127dbb052f2963e3c1095730a996d49a6"
+git-tree-sha1 = "73b0fc9abff1e58f00b59b4ff82d482a35c5e895"
 uuid = "d414da3d-4745-48bb-8d80-42e94e092884"
-version = "0.14.36"
+version = "0.14.37"
 weakdeps = ["CUDA", "Krylov"]
 
     [deps.ClimaCore.extensions]
@@ -887,9 +887,9 @@ version = "2.2.4+0"
 
 [[deps.EnsembleKalmanProcesses]]
 deps = ["Convex", "Distributions", "DocStringExtensions", "FFMPEG", "GaussianRandomFields", "Interpolations", "LinearAlgebra", "MathOptInterface", "Optim", "QuadGK", "Random", "RecipesBase", "SCS", "SparseArrays", "Statistics", "StatsBase", "TOML", "TSVD"]
-git-tree-sha1 = "938ba137333f7be93194cf5ffc4592b68b0efb36"
+git-tree-sha1 = "d2cec7e039df146c39723d908ce06ceb8b233536"
 uuid = "aa8a2aa5-91d8-4396-bcef-d4f2ec43552d"
-version = "2.4.2"
+version = "2.5.0"
 weakdeps = ["Makie"]
 
     [deps.EnsembleKalmanProcesses.extensions]
@@ -1951,9 +1951,9 @@ version = "0.4.8"
 
 [[deps.MPI]]
 deps = ["Distributed", "DocStringExtensions", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "PkgVersion", "PrecompileTools", "Requires", "Serialization", "Sockets"]
-git-tree-sha1 = "892676019c58f34e38743bc989b0eca5bce5edc5"
+git-tree-sha1 = "a61ecf714d71064b766d481ef43c094d4c6e3c52"
 uuid = "da04e1cc-30fd-572f-bb4f-1f8673147195"
-version = "0.20.22"
+version = "0.20.23"
 
     [deps.MPI.extensions]
     AMDGPUExt = "AMDGPU"
@@ -2635,9 +2635,9 @@ version = "0.5.1+0"
 
 [[deps.RootSolvers]]
 deps = ["ForwardDiff", "Printf"]
-git-tree-sha1 = "892b77767827af30868111d257930f567d5d78f8"
+git-tree-sha1 = "454f6e430886ec7b21c223e113fa8eecdc8a8067"
 uuid = "7181ea78-2dcb-4de3-ab41-2b8ab5a31e74"
-version = "0.4.4"
+version = "0.4.5"
 
 [[deps.RoundingEmulator]]
 git-tree-sha1 = "40b9edad2e5287e05bd413a38f61a8ff55b9557b"

.buildkite/pipeline.yml

@@ -73,23 +73,23 @@ steps:
 
       - label: "vaira_test"
         command: "julia --color=yes --project=.buildkite experiments/integrated/fluxnet/run_fluxnet.jl US-Var"
-        artifact_paths: "experiments/integrated/fluxnet/US-Var/out/output_active/*png"
+        artifact_paths: "experiments/integrated/fluxnet/US-Var/out/*pdf"
 
       - label: "ozark_test"
         command: "julia --color=yes --project=.buildkite experiments/integrated/fluxnet/run_fluxnet.jl US-MOz"
-        artifact_paths: "experiments/integrated/fluxnet/US-MOz/out/output_active/*png"
+        artifact_paths: "experiments/integrated/fluxnet/US-MOz/out/*pdf"
 
       - label: "niwot_test"
         command: "julia --color=yes --project=.buildkite experiments/integrated/fluxnet/run_fluxnet.jl US-NR1"
-        artifact_paths: "experiments/integrated/fluxnet/US-NR1/out/output_active/*png"
+        artifact_paths: "experiments/integrated/fluxnet/US-NR1/out/*pdf"
 
       - label: "harvard_test"
         command: "julia --color=yes --project=.buildkite experiments/integrated/fluxnet/run_fluxnet.jl US-Ha1"
-        artifact_paths: "experiments/integrated/fluxnet/US-Ha1/out/output_active/*png"
+        artifact_paths: "experiments/integrated/fluxnet/US-Ha1/out/*pdf"
 
       - label: "ozark_pft"
         command: "julia --color=yes --project=.buildkite experiments/integrated/fluxnet/ozark_pft.jl"
-        artifact_paths: "experiments/integrated/fluxnet/US-MOz/out/pft/output_active/*png"
+        artifact_paths: "experiments/integrated/fluxnet/US-MOz/pft/out/*pdf"
 
       - label: "ozark_conservation"
         command: "julia --color=yes --project=.buildkite experiments/integrated/performance/conservation/ozark_conservation.jl"