Remove trailing spaces (#487)

* remove trailing spaces

* reduce chat :)

* remove trailing spaces

Author: navidcy

docs/make.jl

@@ -51,7 +51,7 @@ pages = [
         "Near-global Ocean simulation" => "literated/near_global_ocean_simulation.md",
         ],
 
-    "Library" => [ 
+    "Library" => [
         "Contents"       => "library/outline.md",
         "Public"         => "library/public.md",
         "Private"        => "library/internals.md",

examples/generate_bathymetry.jl

@@ -3,7 +3,7 @@
 # This example shows how to configure an Immersed boundary grid with realistic bathymetry
 # using ClimaOcean.jl by generating the bathymetry data for the Mediterranean Sea.
 #
-# For this example, we need Oceananigans for the LatitudeLongitudeGrid and Field utilities, 
+# For this example, we need Oceananigans for the LatitudeLongitudeGrid and Field utilities,
 # ClimaOcean to donwload and regrid the bathymetry, and CairoMakie to visualize the grid.
 
 using ClimaOcean

examples/mediterranean_simulation_with_ecco_restoring.jl

@@ -71,7 +71,7 @@ grid = ImmersedBoundaryGrid(grid, GridFittedBottom(bottom_height))
 # using the function `ECCO_restoring_forcing` to apply restoring forcings for these tracers.
 # This allows us to nudge the model towards realistic temperature and salinity profiles.
 
-start_date = DateTime(1993, 1, 1) 
+start_date = DateTime(1993, 1, 1)
 end_date   = DateTime(1993, 12, 1)
 
 FT = ECCO_restoring_forcing(:temperature; start_date, end_date, architecture = GPU(), timescale = 2days)
@@ -90,7 +90,7 @@ ocean = ocean_simulation(grid; forcing = (T = FT, S = FS))
 # In this case, our ECCO dataset has access to a temperature and a salinity
 # field, so we initialize temperature T and salinity S from ECCO.
 
-set!(ocean.model, T = ECCOMetadatum(:temperature; date=start_date), 
+set!(ocean.model, T = ECCOMetadatum(:temperature; date=start_date),
                   S = ECCOMetadatum(:salinity;    date=start_date))
 
 fig = Figure()

experiments/flux_climatology/flux_climatology.jl

@@ -116,17 +116,17 @@ end
 #####
 
 struct PrescribedOcean{A, G, C, U, T, F} <: AbstractModel{Nothing}
-    architecture :: A       
-    grid :: G        
+    architecture :: A
+    grid :: G
     clock :: Clock{C}
     velocities :: U
     tracers :: T
     timeseries :: F
 end
 
-function PrescribedOcean(timeseries; 
-                         grid, 
-                         clock=Clock{Float64}(time = 0)) 
+function PrescribedOcean(timeseries;
+                         grid,
+                         clock=Clock{Float64}(time = 0))
 
     τx = Field{Face, Center, Nothing}(grid)
     τy = Field{Center, Face, Nothing}(grid)
@@ -219,7 +219,7 @@ function progress(sim)
     msg *= @sprintf(", max|u|: (%.2e, %.2e) m s⁻¹, extrema(T): (%.2f, %.2f) ᵒC, wall time: %s",
                     umax..., Tmax, Tmin, prettytime(step_time))
 
-    @info msg 
+    @info msg
 
     wall_time[] = time_ns()
 end

src/DataWrangling/JRA55/JRA55.jl

@@ -4,7 +4,7 @@ export JRA55FieldTimeSeries, JRA55PrescribedAtmosphere, RepeatYearJRA55, MultiYe
 
 using Oceananigans
 using Oceananigans.Units
- 
+
 using Oceananigans.Architectures: arch_array
 using Oceananigans.DistributedComputations
 using Oceananigans.DistributedComputations: child_architecture
@@ -22,7 +22,7 @@ using ClimaOcean.OceanSeaIceModels:
 using CUDA: @allowscalar
 
 using NCDatasets
-using JLD2 
+using JLD2
 using Dates
 using Scratch
 

src/DataWrangling/JRA55/JRA55_field_time_series.jl

@@ -325,7 +325,7 @@ function JRA55FieldTimeSeries(metadata::JRA55Metadata, architecture=CPU(), FT=Fl
     download_dataset(metadata)
 
     # Regularize the backend in case of `JRA55NetCDFBackend`
-    if backend isa JRA55NetCDFBackend 
+    if backend isa JRA55NetCDFBackend
         if backend.metadata isa Nothing
             backend = JRA55NetCDFBackend(backend.length, metadata)
         end

src/DataWrangling/JRA55/JRA55_prescribed_atmosphere.jl

@@ -30,7 +30,7 @@ function JRA55PrescribedAtmosphere(architecture = CPU(), FT = Float32;
                                    other_kw...)
 
     kw = (; time_indexing, backend, start_date, end_date, dataset)
-    kw = merge(kw, other_kw) 
+    kw = merge(kw, other_kw)
 
     ua  = JRA55FieldTimeSeries(:eastward_velocity, architecture, FT;               kw...)
     va  = JRA55FieldTimeSeries(:northward_velocity, architecture, FT;              kw...)
@@ -48,7 +48,7 @@ function JRA55PrescribedAtmosphere(architecture = CPU(), FT = Float32;
     # Remember that rivers and icebergs are on a different grid and have
     # a different frequency than the rest of the JRA55 data. We use `PrescribedAtmospheres`
     # "auxiliary_freshwater_flux" feature to represent them.
-    if include_rivers_and_icebergs    
+    if include_rivers_and_icebergs
         Fri = JRA55FieldTimeSeries(:river_freshwater_flux, architecture;   kw...)
         Fic = JRA55FieldTimeSeries(:iceberg_freshwater_flux, architecture; kw...)
         auxiliary_freshwater_flux = (rivers = Fri, icebergs = Fic)

src/Diagnostics/mixed_layer_depth.jl

@@ -57,7 +57,7 @@ const f = Face()
 @kernel function _compute_mixed_layer_depth!(mld, grid, b, Δb★)
     i, j = @index(Global, NTuple)
     Nz = size(grid, 3)
-    
+
     Δb = zero(grid)
     bN = @inbounds b[i, j, Nz]
     mixed = true

src/InitialConditions/InitialConditions.jl

@@ -16,30 +16,30 @@ using KernelAbstractions.Extras.LoopInfo: @unroll
 using JLD2
 
 # Implementation of 3-dimensional regridding
-# TODO: move all the following to Oceananigans! 
+# TODO: move all the following to Oceananigans!
 
 using Oceananigans.Fields: regrid!, interpolate!
-using Oceananigans.Grids: cpu_face_constructor_x, 
-                          cpu_face_constructor_y, 
+using Oceananigans.Grids: cpu_face_constructor_x,
+                          cpu_face_constructor_y,
                           cpu_face_constructor_z,
                           topology
 
 # Should we move this to grids??
-construct_grid(::Type{<:RectilinearGrid}, arch, size, extent, topology) = 
+construct_grid(::Type{<:RectilinearGrid}, arch, size, extent, topology) =
     RectilinearGrid(arch; size, x = extent[1], y = extent[2], z = extent[2], topology)
 
-construct_grid(::Type{<:LatitudeLongitudeGrid}, arch, size, extent, topology) = 
+construct_grid(::Type{<:LatitudeLongitudeGrid}, arch, size, extent, topology) =
     LatitudeLongitudeGrid(arch; size, longitude = extent[1], latitude = extent[2], z = extent[3], topology)
 
 # Regrid a field in three dimensions
 function three_dimensional_regrid!(a, b)
     target_grid = a.grid isa ImmersedBoundaryGrid ? a.grid.underlying_grid : a.grid
-    source_grid = b.grid isa ImmersedBoundaryGrid ? b.grid.underlying_grid : b.grid 
+    source_grid = b.grid isa ImmersedBoundaryGrid ? b.grid.underlying_grid : b.grid
 
     topo = topology(target_grid)
     arch = architecture(target_grid)
     arch = child_architecture(arch)
-    
+
     target_y = yt = cpu_face_constructor_y(target_grid)
     target_z = zt = cpu_face_constructor_z(target_grid)
 
@@ -56,7 +56,7 @@ function three_dimensional_regrid!(a, b)
     field_z = Field(location(b), zgrid)
     regrid!(field_z, zgrid, source_grid, b)
 
-    # regrid in y 
+    # regrid in y
     @debug "Regridding in y"
     ygrid   = construct_grid(typeof(target_grid), arch, (Ns[1], Nt[2], Nt[3]), (xs, yt, zt), topo)
     field_y = Field(location(b), ygrid);

src/InitialConditions/diffuse_tracers.jl

@@ -60,7 +60,7 @@ function diffuse_tracers(initial_tracers;
     smoothing_simulation = Simulation(smoothing_model; Δt, stop_time=1)
 
     # Remove NaN checker
-    pop!(smoothing_simulation.callbacks, :nan_checker) 
+    pop!(smoothing_simulation.callbacks, :nan_checker)
 
     # Restore values to default in the masked region
     function restore_values(sim)