Merge #128

128: Update environments r=charleskawczynski a=charleskawczynski

This PR adds some deps to the test env, which are needed for future tests, and updates the manifest files

Co-authored-by: Charles Kawczynski <[email protected]>

Author: bors[bot]

.dev/Manifest.toml

@@ -77,9 +77,9 @@ version = "0.21.3"
 
 [[deps.JuliaFormatter]]
 deps = ["CSTParser", "CommonMark", "DataStructures", "Glob", "Pkg", "Tokenize"]
-git-tree-sha1 = "76ee67858b65133b2460b0eebf52e49950bb90a3"
+git-tree-sha1 = "004138f0ec3bedc35c0321a9cf1836415641d1f8"
 uuid = "98e50ef6-434e-11e9-1051-2b60c6c9e899"
-version = "1.0.16"
+version = "1.0.17"
 
 [[deps.LibCURL]]
 deps = ["LibCURL_jll", "MozillaCACerts_jll"]

docs/Manifest.toml

@@ -39,9 +39,9 @@ version = "6.0.24"
 
 [[deps.ArrayInterfaceCore]]
 deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"]
-git-tree-sha1 = "c46fb7dd1d8ca1d213ba25848a5ec4e47a1a1b08"
+git-tree-sha1 = "badccc4459ffffb6bce5628461119b7057dec32c"
 uuid = "30b0a656-2188-435a-8636-2ec0e6a096e2"
-version = "0.1.26"
+version = "0.1.27"
 
 [[deps.ArrayInterfaceOffsetArrays]]
 deps = ["ArrayInterface", "OffsetArrays", "Static"]
@@ -152,7 +152,7 @@ version = "0.3.2"
 deps = ["CUDA", "ClimaComms", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "SciMLBase", "StaticArrays"]
 path = ".."
 uuid = "595c0a79-7f3d-439a-bc5a-b232dc3bde79"
-version = "0.2.6"
+version = "0.6.0"
 
 [[deps.CloseOpenIntervals]]
 deps = ["ArrayInterface", "Static"]
@@ -201,9 +201,9 @@ uuid = "adafc99b-e345-5852-983c-f28acb93d879"
 version = "0.3.1"
 
 [[deps.DataAPI]]
-git-tree-sha1 = "e08915633fcb3ea83bf9d6126292e5bc5c739922"
+git-tree-sha1 = "e8119c1a33d267e16108be441a287a6981ba1630"
 uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a"
-version = "1.13.0"
+version = "1.14.0"
 
 [[deps.DataStructures]]
 deps = ["Compat", "InteractiveUtils", "OrderedCollections"]
@@ -228,9 +228,9 @@ version = "0.4.0"
 
 [[deps.DiffEqBase]]
 deps = ["ArrayInterfaceCore", "ChainRulesCore", "DataStructures", "Distributions", "DocStringExtensions", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "MuladdMacro", "Parameters", "PreallocationTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "Static", "StaticArrays", "Statistics", "Tricks", "ZygoteRules"]
-git-tree-sha1 = "2bec09e4a29c5afbd035b61cfabcc8129dce298b"
+git-tree-sha1 = "9f5c00eff244df424479bcd43bd5549eae6a7037"
 uuid = "2b5f629d-d688-5b77-993f-72d75c75574e"
-version = "6.110.0"
+version = "6.111.0"
 
 [[deps.DiffEqCallbacks]]
 deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "LinearAlgebra", "Markdown", "NLsolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArrays"]
@@ -268,9 +268,9 @@ version = "0.25.79"
 
 [[deps.DocStringExtensions]]
 deps = ["LibGit2"]
-git-tree-sha1 = "c36550cb29cbe373e95b3f40486b9a4148f89ffd"
+git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d"
 uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae"
-version = "0.9.2"
+version = "0.9.3"
 
 [[deps.Documenter]]
 deps = ["ANSIColoredPrinters", "Base64", "Dates", "DocStringExtensions", "IOCapture", "InteractiveUtils", "JSON", "LibGit2", "Logging", "Markdown", "REPL", "Test", "Unicode"]
@@ -327,9 +327,9 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee"
 
 [[deps.FillArrays]]
 deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"]
-git-tree-sha1 = "802bfc139833d2ba893dd9e62ba1767c88d708ae"
+git-tree-sha1 = "9a0472ec2f5409db243160a8b030f94c380167a3"
 uuid = "1a297f60-69ca-5386-bcde-b61e274b549b"
-version = "0.13.5"
+version = "0.13.6"
 
 [[deps.FiniteDiff]]
 deps = ["ArrayInterfaceCore", "LinearAlgebra", "Requires", "Setfield", "SparseArrays", "StaticArrays"]
@@ -339,9 +339,9 @@ version = "2.17.0"
 
 [[deps.ForwardDiff]]
 deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions", "StaticArrays"]
-git-tree-sha1 = "187198a4ed8ccd7b5d99c41b69c679269ea2b2d4"
+git-tree-sha1 = "a69dd6db8a809f78846ff259298678f0d6212180"
 uuid = "f6369f11-7733-5829-9624-2563aa707210"
-version = "0.10.32"
+version = "0.10.34"
 
 [[deps.FunctionWrappers]]
 git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e"
@@ -378,9 +378,9 @@ version = "0.16.7"
 
 [[deps.HTTP]]
 deps = ["Base64", "CodecZlib", "Dates", "IniFile", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"]
-git-tree-sha1 = "e1acc37ed078d99a714ed8376446f92a5535ca65"
+git-tree-sha1 = "2e13c9956c82f5ae8cbdb8335327e63badb8c4ff"
 uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3"
-version = "1.5.5"
+version = "1.6.2"
 
 [[deps.HypergeometricFunctions]]
 deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions", "Test"]
@@ -506,9 +506,9 @@ uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb"
 
 [[deps.Libiconv_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
-git-tree-sha1 = "42b62845d70a619f063a7da093d995ec8e15e778"
+git-tree-sha1 = "c7cb1f5d892775ba13767a87c7ada0b980ea0a71"
 uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531"
-version = "1.16.1+1"
+version = "1.16.1+2"
 
 [[deps.LineSearches]]
 deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "Printf"]
@@ -660,9 +660,9 @@ version = "0.12.3"
 
 [[deps.Parsers]]
 deps = ["Dates", "SnoopPrecompile"]
-git-tree-sha1 = "b64719e8b4504983c7fca6cc9db3ebc8acc2a4d6"
+git-tree-sha1 = "6466e524967496866901a78fca3f2e9ea445a559"
 uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0"
-version = "2.5.1"
+version = "2.5.2"
 
 [[deps.Pkg]]
 deps = ["Artifacts", "Dates", "Downloads", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"]
@@ -683,9 +683,9 @@ version = "0.1.11"
 
 [[deps.PreallocationTools]]
 deps = ["Adapt", "ArrayInterfaceCore", "ForwardDiff"]
-git-tree-sha1 = "788b63c3b7494d4305357b2b352b551ba40d563c"
+git-tree-sha1 = "2c88339bcfa011089f7538f89c5be780d0b558bb"
 uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46"
-version = "0.4.5"
+version = "0.4.6"
 
 [[deps.Preferences]]
 deps = ["TOML"]
@@ -730,10 +730,10 @@ uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01"
 version = "1.3.2"
 
 [[deps.RecursiveArrayTools]]
-deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "Tables", "ZygoteRules"]
-git-tree-sha1 = "a5ce741acddc02f0d4fc6505463ca89697d7fb23"
+deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "ZygoteRules"]
+git-tree-sha1 = "53d040e68b5afff59a9eb1f692d9a08369b07f61"
 uuid = "731186ca-8d62-57ce-b412-fbd966d074cd"
-version = "2.32.3"
+version = "2.34.0"
 
 [[deps.Reexport]]
 git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b"
@@ -775,9 +775,9 @@ version = "0.1.0"
 
 [[deps.SciMLBase]]
 deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Preferences", "RecipesBase", "RecursiveArrayTools", "RuntimeGeneratedFunctions", "StaticArraysCore", "Statistics", "Tables"]
-git-tree-sha1 = "6a5c8e335e82b0c674bf74f7b45f005175b0cc5f"
+git-tree-sha1 = "0f016d69ed6df4ec438e468986036a75493c3261"
 uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
-version = "1.77.0"
+version = "1.79.0"
 
 [[deps.Serialization]]
 uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b"
@@ -864,9 +864,9 @@ version = "1.1.1"
 
 [[deps.StrideArraysCore]]
 deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "ManualMemory", "SIMDTypes", "Static", "ThreadingUtilities"]
-git-tree-sha1 = "baef2a7220109851a17f62776a27cc1fa3aadea7"
+git-tree-sha1 = "8e91e5618bbca975312313c39ff827ea8f802fe3"
 uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da"
-version = "0.4.3"
+version = "0.4.4"
 
 [[deps.StringEncodings]]
 deps = ["Libiconv_jll"]
@@ -878,6 +878,12 @@ version = "0.3.5"
 deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"]
 uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9"
 
+[[deps.SymbolicIndexingInterface]]
+deps = ["DocStringExtensions"]
+git-tree-sha1 = "6b764c160547240d868be4e961a5037f47ad7379"
+uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5"
+version = "0.2.1"
+
 [[deps.TOML]]
 deps = ["Dates"]
 uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76"