Merge #227

227: Update dependencies r=charleskawczynski a=charleskawczynski

This PR updates the manifest files (notably ClimaCore and CUDA)

Co-authored-by: Charles Kawczynski <[email protected]>

Author: bors[bot]

.dev/Manifest.toml

@@ -79,9 +79,9 @@ version = "0.21.4"
 
 [[deps.JuliaFormatter]]
 deps = ["CSTParser", "CommonMark", "DataStructures", "Glob", "Pkg", "PrecompileTools", "Tokenize"]
-git-tree-sha1 = "c0ac2f93058fd148267154c42dd7dc79869f7923"
+git-tree-sha1 = "80031f6e58b09b0de4553bf63d9a36ec5db57967"
 uuid = "98e50ef6-434e-11e9-1051-2b60c6c9e899"
-version = "1.0.37"
+version = "1.0.39"
 
 [[deps.LibCURL]]
 deps = ["LibCURL_jll", "MozillaCACerts_jll"]

docs/Manifest.toml

@@ -74,9 +74,9 @@ version = "7.4.11"
 
 [[deps.ArrayLayouts]]
 deps = ["FillArrays", "LinearAlgebra"]
-git-tree-sha1 = "0d61921af2799487b80453a44abb57db7a0c1381"
+git-tree-sha1 = "9a731850434825d183af39c6e6cd0a1c32dd7e20"
 uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a"
-version = "1.4.1"
+version = "1.4.2"
 weakdeps = ["SparseArrays"]
 
     [deps.ArrayLayouts.extensions]
@@ -162,16 +162,20 @@ uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9"
 version = "0.2.4"
 
 [[deps.CUDA]]
-deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CUDA_Driver_jll", "CUDA_Runtime_Discovery", "CUDA_Runtime_jll", "ExprTools", "GPUArrays", "GPUCompiler", "KernelAbstractions", "LLVM", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "Preferences", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "SpecialFunctions", "UnsafeAtomicsLLVM"]
-git-tree-sha1 = "968c1365e2992824c3e7a794e30907483f8469a9"
+deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CUDA_Driver_jll", "CUDA_Runtime_Discovery", "CUDA_Runtime_jll", "Crayons", "DataFrames", "ExprTools", "GPUArrays", "GPUCompiler", "KernelAbstractions", "LLVM", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "NVTX", "Preferences", "PrettyTables", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "Statistics", "UnsafeAtomicsLLVM"]
+git-tree-sha1 = "f062a48c26ae027f70c44f48f244862aec47bf99"
 uuid = "052768ef-5323-5732-b1bb-66c8b64840ba"
-version = "4.4.1"
+version = "5.0.0"
+weakdeps = ["SpecialFunctions"]
+
+    [deps.CUDA.extensions]
+    SpecialFunctionsExt = "SpecialFunctions"
 
 [[deps.CUDA_Driver_jll]]
 deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"]
-git-tree-sha1 = "498f45593f6ddc0adff64a9310bb6710e851781b"
+git-tree-sha1 = "35a37bb72b35964f2895c12c687ae263b4ac170c"
 uuid = "4ee394cb-3365-5eb0-8335-949819d2adfc"
-version = "0.5.0+1"
+version = "0.6.0+3"
 
 [[deps.CUDA_Runtime_Discovery]]
 deps = ["Libdl"]
@@ -181,9 +185,9 @@ version = "0.2.2"
 
 [[deps.CUDA_Runtime_jll]]
 deps = ["Artifacts", "CUDA_Driver_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"]
-git-tree-sha1 = "5248d9c45712e51e27ba9b30eebec65658c6ce29"
+git-tree-sha1 = "bfe5a693a11522d58392f742243f2b50dc27afd6"
 uuid = "76a88914-d11a-5bdc-97e0-2f5a05c973a2"
-version = "0.6.0+0"
+version = "0.9.2+0"
 
 [[deps.Cairo_jll]]
 deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"]
@@ -211,9 +215,9 @@ version = "0.5.4"
 
 [[deps.ClimaCore]]
 deps = ["Adapt", "BandedMatrices", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "LinearAlgebra", "PkgVersion", "RecursiveArrayTools", "Requires", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "UnPack"]
-git-tree-sha1 = "cb5a51aa8b18f60c6ad6205bb39e4226868bbbc5"
+git-tree-sha1 = "c6f1342543def2fbb6d18ea910470a85411dda39"
 uuid = "d414da3d-4745-48bb-8d80-42e94e092884"
-version = "0.10.51"
+version = "0.10.52"
 
 [[deps.ClimaCorePlots]]
 deps = ["ClimaCore", "RecipesBase", "StaticArrays", "TriplotBase"]
@@ -225,7 +229,7 @@ version = "0.2.4"
 deps = ["CUDA", "ClimaComms", "Colors", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"]
 path = ".."
 uuid = "595c0a79-7f3d-439a-bc5a-b232dc3bde79"
-version = "0.7.9"
+version = "0.7.13"
 
 [[deps.CloseOpenIntervals]]
 deps = ["Static", "StaticArrayInterface"]
@@ -337,6 +341,12 @@ git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c"
 uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a"
 version = "1.15.0"
 
+[[deps.DataFrames]]
+deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"]
+git-tree-sha1 = "04c738083f29f86e62c8afc341f0967d8717bdb8"
+uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
+version = "1.6.1"
+
 [[deps.DataStructures]]
 deps = ["Compat", "InteractiveUtils", "OrderedCollections"]
 git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d"
@@ -360,9 +370,9 @@ version = "1.9.1"
 
 [[deps.DiffEqBase]]
 deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces", "ZygoteRules"]
-git-tree-sha1 = "dc50f5ef15406701057895deda051f82e53d5773"
+git-tree-sha1 = "22ab786efaef7b9ccb66a272d7cc2471bea76ba9"
 uuid = "2b5f629d-d688-5b77-993f-72d75c75574e"
-version = "6.130.2"
+version = "6.130.4"
 
     [deps.DiffEqBase.extensions]
     DiffEqBaseDistributionsExt = "Distributions"
@@ -646,9 +656,9 @@ version = "3.3.8+0"
 
 [[deps.GPUArrays]]
 deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"]
-git-tree-sha1 = "2e57b4a4f9cc15e85a24d603256fe08e527f48d1"
+git-tree-sha1 = "8ad8f375ae365aa1eb2f42e2565a40b55a4b69a8"
 uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7"
-version = "8.8.1"
+version = "9.0.0"
 
 [[deps.GPUArraysCore]]
 deps = ["Adapt"]
@@ -658,9 +668,9 @@ version = "0.1.5"
 
 [[deps.GPUCompiler]]
 deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "Scratch", "TimerOutputs", "UUIDs"]
-git-tree-sha1 = "72b2e3c2ba583d1a7aa35129e56cf92e07c083e3"
+git-tree-sha1 = "5e4487558477f191c043166f8301dd0b4be4e2b2"
 uuid = "61eb1bfa-7361-4325-ad38-22787b887f55"
-version = "0.21.4"
+version = "0.24.5"
 
 [[deps.GR]]
 deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"]
@@ -710,9 +720,9 @@ version = "1.0.2"
 
 [[deps.HDF5]]
 deps = ["Compat", "HDF5_jll", "Libdl", "MPIPreferences", "Mmap", "Preferences", "Printf", "Random", "Requires", "UUIDs"]
-git-tree-sha1 = "ec7df74b7b2022e8252a8bfd4ec23411491adc3b"
+git-tree-sha1 = "26407bd1c60129062cec9da63dc7d08251544d53"
 uuid = "f67ccb44-e63f-5c2f-98bd-6dc0ccc4ba2f"
-version = "0.17.0"
+version = "0.17.1"
 weakdeps = ["MPI"]
 
     [deps.HDF5.extensions]
@@ -753,6 +763,12 @@ git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1"
 uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173"
 version = "0.1.1"
 
+[[deps.InlineStrings]]
+deps = ["Parsers"]
+git-tree-sha1 = "9cc2baf75c6d09f9da536ddf58eb2f29dedaf461"
+uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48"
+version = "1.4.0"
+
 [[deps.IntelOpenMP_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
 git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32"
@@ -773,6 +789,11 @@ weakdeps = ["Statistics"]
     [deps.IntervalSets.extensions]
     IntervalSetsStatisticsExt = "Statistics"
 
+[[deps.InvertedIndices]]
+git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038"
+uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f"
+version = "1.3.0"
+
 [[deps.IrrationalConstants]]
 git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2"
 uuid = "92d709cd-6900-40b7-9082-c6be49f344b6"
@@ -861,15 +882,15 @@ version = "3.0.0+1"
 
 [[deps.LLVM]]
 deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"]
-git-tree-sha1 = "a9d2ce1d5007b1e8f6c5b89c5a31ff8bd146db5c"
+git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366"
 uuid = "929cbde3-209d-540e-8aea-75f648917ca0"
-version = "6.2.1"
+version = "6.3.0"
 
 [[deps.LLVMExtra_jll]]
 deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"]
-git-tree-sha1 = "7ca6850ae880cc99b59b88517545f91a52020afa"
+git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2"
 uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab"
-version = "0.0.25+0"
+version = "0.0.26+0"
 
 [[deps.LLVMOpenMP_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
@@ -1030,9 +1051,9 @@ uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
 
 [[deps.LoggingExtras]]
 deps = ["Dates", "Logging"]
-git-tree-sha1 = "0d097476b6c381ab7906460ef1ef1638fbce1d91"
+git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075"
 uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36"
-version = "1.0.2"
+version = "1.0.3"
 
 [[deps.MKL_jll]]
 deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"]
@@ -1111,9 +1132,9 @@ version = "0.3.2"
 
 [[deps.MicrosoftMPI_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
-git-tree-sha1 = "a8027af3d1743b3bfae34e54872359fdebb31422"
+git-tree-sha1 = "a7023883872e52bc29bcaac74f19adf39347d2d5"
 uuid = "9237b28f-5490-5468-be7b-bb81f5f5e6cf"
-version = "10.1.3+4"
+version = "10.1.4+0"
 
 [[deps.Missings]]
 deps = ["DataAPI"]
@@ -1185,9 +1206,9 @@ version = "0.8.1+0"
 
 [[deps.OpenMPI_jll]]
 deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"]
-git-tree-sha1 = "f3080f4212a8ba2ceb10a34b938601b862094314"
+git-tree-sha1 = "e25c1778a98e34219a00455d6e4384e017ea9762"
 uuid = "fe0851c0-eecd-5654-98d4-656369965a5c"
-version = "4.1.5+0"
+version = "4.1.6+0"
 
 [[deps.OpenSSL]]
 deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"]
@@ -1225,9 +1246,9 @@ version = "10.42.0+0"
 
 [[deps.PDMats]]
 deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"]
-git-tree-sha1 = "bf6085e8bd7735e68c210c6e5d81f9a6fe192060"
+git-tree-sha1 = "528664265c9c36b3ecdb6d721d47aaab52ddf267"
 uuid = "90014a1f-27ba-587c-ab20-58faa44d9150"
-version = "0.11.19"
+version = "0.11.24"
 
 [[deps.Parameters]]
 deps = ["OrderedCollections", "UnPack"]
@@ -1297,16 +1318,22 @@ version = "1.39.0"
 
 [[deps.Polyester]]
 deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"]
-git-tree-sha1 = "d4c9ebdc6528a4aaf7cfcf43b482e927267b400d"
+git-tree-sha1 = "c7dc9720390fcc296bf757b3f833f9e41c68a086"
 uuid = "f517fe37-dbe3-4b94-8317-1923a5111588"
-version = "0.7.6"
+version = "0.7.7"
 
 [[deps.PolyesterWeave]]
 deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"]
 git-tree-sha1 = "240d7170f5ffdb285f9427b92333c3463bf65bf6"
 uuid = "1d0040c9-8b98-4ee7-8388-3f51789ca0ad"
 version = "0.2.1"
 
+[[deps.PooledArrays]]
+deps = ["DataAPI", "Future"]
+git-tree-sha1 = "36d8b4b899628fb92c2749eb488d884a926614d3"
+uuid = "2dfb63ee-cc39-5dd5-95bd-886bf059d720"
+version = "1.4.3"
+
 [[deps.PreallocationTools]]
 deps = ["Adapt", "ArrayInterface", "ForwardDiff", "Requires"]
 git-tree-sha1 = "f739b1b3cc7b9949af3b35089931f2b58c289163"
@@ -1467,9 +1494,9 @@ version = "0.1.0"
 
 [[deps.SciMLBase]]
 deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"]
-git-tree-sha1 = "fd34cc828616e35d4a86a24eb290186db2956f68"
+git-tree-sha1 = "e7c518184850701c91df0e898241c07e03c7f367"
 uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
-version = "2.0.4"
+version = "2.0.7"
 
     [deps.SciMLBase.extensions]
     ZygoteExt = "Zygote"
@@ -1489,6 +1516,12 @@ git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a"
 uuid = "6c6a2e73-6563-6170-7368-637461726353"
 version = "1.2.0"
 
+[[deps.SentinelArrays]]
+deps = ["Dates", "Random"]
+git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39"
+uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c"
+version = "1.4.0"
+
 [[deps.Serialization]]
 uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b"
 
@@ -1794,9 +1827,9 @@ version = "1.25.0+0"
 
 [[deps.XML2_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"]
-git-tree-sha1 = "04a51d15436a572301b5abbb9d099713327e9fc4"
+git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916"
 uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a"
-version = "2.10.4+0"
+version = "2.11.5+0"
 
 [[deps.XSLT_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"]