Rename post_explicit! to cache! and post_implicit! to cache_imp!

Author: dennisYatunin

Project.toml

@@ -1,7 +1,7 @@
 name = "ClimaTimeSteppers"
 uuid = "595c0a79-7f3d-439a-bc5a-b232dc3bde79"
 authors = ["Climate Modeling Alliance"]
-version = "0.7.40"
+version = "0.8.0"
 
 [deps]
 ClimaComms = "3a4d1b5c-c61d-41fd-a00a-5873ba7a1b0d"

docs/src/api/ode_solvers.md

@@ -7,6 +7,7 @@ CurrentModule = ClimaTimeSteppers
 ## Interface
 
 ```@docs
+ClimaODEFunction
 AbstractAlgorithmConstraint
 Unconstrained
 SSP

ext/ClimaTimeSteppersBenchmarkToolsExt.jl

@@ -35,8 +35,8 @@ n_calls_per_step(::CTS.ARS343, max_newton_iters) = Dict(
     "T_exp_T_lim!" => 4,
     "lim!" => 4,
     "dss!" => 4,
-    "post_explicit!" => 3,
-    "post_implicit!" => 4,
+    "cache!" => 3,
+    "cache_imp!" => 4,
     "step!" => 1,
 )
 function n_calls_per_step(alg::CTS.RosenbrockAlgorithm)
@@ -47,8 +47,8 @@ function n_calls_per_step(alg::CTS.RosenbrockAlgorithm)
         "T_exp_T_lim!" => CTS.n_stages(alg.tableau),
         "lim!" => 0,
         "dss!" => CTS.n_stages(alg.tableau),
-        "post_explicit!" => 0,
-        "post_implicit!" => CTS.n_stages(alg.tableau),
+        "cache!" => 0,
+        "cache_imp!" => CTS.n_stages(alg.tableau),
         "step!" => 1,
     )
 end
@@ -59,8 +59,7 @@ function maybe_push!(trials₀, name, f!, args, kwargs, only)
     end
 end
 
-const allowed_names =
-    ["Wfact", "ldiv!", "T_imp!", "T_exp_T_lim!", "lim!", "dss!", "post_explicit!", "post_implicit!", "step!"]
+const allowed_names = ["Wfact", "ldiv!", "T_imp!", "T_exp_T_lim!", "lim!", "dss!", "cache!", "cache_imp!", "step!"]
 
 """
     benchmark_step(
@@ -89,8 +88,8 @@ Benchmark a DistributedODEIntegrator given:
  - "T_exp_T_lim!"
  - "lim!"
  - "dss!"
- - "post_explicit!"
- - "post_implicit!"
+ - "cache!"
+ - "cache_imp!"
  - "step!"
 """
 function CTS.benchmark_step(
@@ -123,8 +122,8 @@ function CTS.benchmark_step(
         maybe_push!(trials₀, "T_exp_T_lim!", remaining_fun(integrator), remaining_args(integrator), kwargs, only)
         maybe_push!(trials₀, "lim!", f.lim!, (Xlim, p, t, u), kwargs, only)
         maybe_push!(trials₀, "dss!", f.dss!, (u, p, t), kwargs, only)
-        maybe_push!(trials₀, "post_explicit!", f.post_explicit!, (u, p, t), kwargs, only)
-        maybe_push!(trials₀, "post_implicit!", f.post_implicit!, (u, p, t), kwargs, only)
+        maybe_push!(trials₀, "cache!", f.cache!, (u, p, t), kwargs, only)
+        maybe_push!(trials₀, "cache_imp!", f.cache_imp!, (u, p, t), kwargs, only)
         maybe_push!(trials₀, "step!", SciMLBase.step!, (integrator, ), kwargs, only)
 #! format: on
 

src/functions.jl

@@ -4,26 +4,51 @@ export ClimaODEFunction, ForwardEulerODEFunction
 
 abstract type AbstractClimaODEFunction <: DiffEqBase.AbstractODEFunction{true} end
 
-struct ClimaODEFunction{TEL, TL, TE, TI, L, D, PE, PI} <: AbstractClimaODEFunction
+"""
+    ClimaODEFunction(; T_imp!, [dss!], [cache!], [cache_imp!])
+    ClimaODEFunction(; T_exp!, T_lim!, [T_imp!], [lim!], [dss!], [cache!], [cache_imp!])
+    ClimaODEFunction(; T_exp_lim!, [T_imp!], [lim!], [dss!], [cache!], [cache_imp!])
+
+Container for all functions used to advance through a timestep:
+    - `T_imp!(T_imp, u, p, t)`: sets the implicit tendency
+    - `T_exp!(T_exp, u, p, t)`: sets the component of the explicit tendency that
+      is not passed through the limiter
+    - `T_lim!(T_lim, u, p, t)`: sets the component of the explicit tendency that
+      is passed through the limiter
+    - `T_exp_lim!(T_exp, T_lim, u, p, t)`: fused alternative to the separate
+      functions `T_exp!` and `T_lim!`
+    - `lim!(u, p, t, u_ref)`: applies the limiter to every state `u` that has
+      been incremented from `u_ref` by the explicit tendency component `T_lim!`
+    - `dss!(u, p, t)`: applies direct stiffness summation to every state `u`,
+      except for intermediate states generated within the implicit solver
+    - `cache!(u, p, t)`: updates the cache `p` to reflect the state `u` before
+      the first timestep and on every subsequent timestepping stage
+    - `cache_imp!(u, p, t)`: updates the components of the cache `p` that are
+      required to evaluate `T_imp!` and its Jacobian within the implicit solver
+By default, `lim!`, `dss!`, and `cache!` all do nothing, and `cache_imp!` is
+identical to `cache!`. Any of the tendency functions can be set to `nothing` in
+order to avoid corresponding allocations in the integrator.
+"""
+struct ClimaODEFunction{TEL, TL, TE, TI, L, D, C, CI} <: AbstractClimaODEFunction
     T_exp_T_lim!::TEL
     T_lim!::TL
     T_exp!::TE
     T_imp!::TI
     lim!::L
     dss!::D
-    post_explicit!::PE
-    post_implicit!::PI
+    cache!::C
+    cache_imp!::CI
     function ClimaODEFunction(;
-        T_exp_T_lim! = nothing, # nothing or (uₜ_exp, uₜ_lim, u, p, t) -> ...
-        T_lim! = nothing, # nothing or (uₜ, u, p, t) -> ...
-        T_exp! = nothing, # nothing or (uₜ, u, p, t) -> ...
-        T_imp! = nothing, # nothing or (uₜ, u, p, t) -> ...
+        T_exp_T_lim! = nothing,
+        T_lim! = nothing,
+        T_exp! = nothing,
+        T_imp! = nothing,
         lim! = (u, p, t, u_ref) -> nothing,
         dss! = (u, p, t) -> nothing,
-        post_explicit! = (u, p, t) -> nothing,
-        post_implicit! = (u, p, t) -> nothing,
+        cache! = (u, p, t) -> nothing,
+        cache_imp! = cache!,
     )
-        args = (T_exp_T_lim!, T_lim!, T_exp!, T_imp!, lim!, dss!, post_explicit!, post_implicit!)
+        args = (T_exp_T_lim!, T_lim!, T_exp!, T_imp!, lim!, dss!, cache!, cache_imp!)
 
         if !isnothing(T_exp_T_lim!)
             @assert isnothing(T_exp!) "`T_exp_T_lim!` was passed, `T_exp!` must be `nothing`"

src/integrators.jl

@@ -147,8 +147,8 @@ function DiffEqBase.__init(
         tdir,
     )
     if prob.f isa ClimaODEFunction
-        (; post_explicit!) = prob.f
-        isnothing(post_explicit!) || post_explicit!(u0, p, t0)
+        (; cache!) = prob.f
+        isnothing(cache!) || cache!(u0, p, t0)
     end
     DiffEqBase.initialize!(callback, u0, t0, integrator)
     return integrator

src/nl_solvers/newtons_method.jl

@@ -130,7 +130,7 @@ struct ForwardDiffStepSize3 <: ForwardDiffStepSize end
 Computes the Jacobian-vector product `j(x[n]) * Δx[n]` for a Newton-Krylov
 method without directly using the Jacobian `j(x[n])`, and instead only using
 `x[n]`, `f(x[n])`, and other function evaluations `f(x′)`. This is done by
-calling `jvp!(::JacobianFreeJVP, cache, jΔx, Δx, x, f!, f, post_implicit!)`.
+calling `jvp!(::JacobianFreeJVP, cache, jΔx, Δx, x, f!, f, prepare_for_f!)`.
 The `jΔx` passed to a Jacobian-free JVP is modified in-place. The `cache` can
 be obtained with `allocate_cache(::JacobianFreeJVP, x_prototype)`, where
 `x_prototype` is `similar` to `x` (and also to `Δx` and `f`).
@@ -151,13 +151,13 @@ end
 
 allocate_cache(::ForwardDiffJVP, x_prototype) = (; x2 = zero(x_prototype), f2 = zero(x_prototype))
 
-function jvp!(alg::ForwardDiffJVP, cache, jΔx, Δx, x, f!, f, post_implicit!)
+function jvp!(alg::ForwardDiffJVP, cache, jΔx, Δx, x, f!, f, prepare_for_f!)
     (; default_step, step_adjustment) = alg
     (; x2, f2) = cache
     FT = eltype(x)
     ε = FT(step_adjustment) * default_step(Δx, x)
     @. x2 = x + ε * Δx
-    isnothing(post_implicit!) || post_implicit!(x2)
+    isnothing(prepare_for_f!) || prepare_for_f!(x2)
     f!(f2, x2)
     @. jΔx = (f2 - f) / ε
 end
@@ -343,7 +343,7 @@ end
 Finds an approximation `Δx[n] ≈ j(x[n]) \\ f(x[n])` for Newton's method such
 that `‖f(x[n]) - j(x[n]) * Δx[n]‖ ≤ rtol[n] * ‖f(x[n])‖`, where `rtol[n]` is the
 value of the forcing term on iteration `n`. This is done by calling
-`solve_krylov!(::KrylovMethod, cache, Δx, x, f!, f, n, post_implicit!, j = nothing)`,
+`solve_krylov!(::KrylovMethod, cache, Δx, x, f!, f, n, prepare_for_f!, j = nothing)`,
 where `f` is `f(x[n])` and, if it is specified, `j` is either `j(x[n])` or an
 approximation of `j(x[n])`. The `Δx` passed to a Krylov method is modified in-place.
 The `cache` can be obtained with `allocate_cache(::KrylovMethod, x_prototype)`,
@@ -428,14 +428,14 @@ function allocate_cache(alg::KrylovMethod, x_prototype)
     )
 end
 
-NVTX.@annotate function solve_krylov!(alg::KrylovMethod, cache, Δx, x, f!, f, n, post_implicit!, j = nothing)
+NVTX.@annotate function solve_krylov!(alg::KrylovMethod, cache, Δx, x, f!, f, n, prepare_for_f!, j = nothing)
     (; jacobian_free_jvp, forcing_term, solve_kwargs) = alg
     (; disable_preconditioner, debugger) = alg
     type = solver_type(alg)
     (; jacobian_free_jvp_cache, forcing_term_cache, solver, debugger_cache) = cache
     jΔx!(jΔx, Δx) =
         isnothing(jacobian_free_jvp) ? mul!(jΔx, j, Δx) :
-        jvp!(jacobian_free_jvp, jacobian_free_jvp_cache, jΔx, Δx, x, f!, f, post_implicit!)
+        jvp!(jacobian_free_jvp, jacobian_free_jvp_cache, jΔx, Δx, x, f!, f, prepare_for_f!)
     opj = LinearOperator(eltype(x), length(x), length(x), false, false, jΔx!)
     M = disable_preconditioner || isnothing(j) || isnothing(jacobian_free_jvp) ? I : j
     print_debug!(debugger, debugger_cache, opj, M)
@@ -567,25 +567,9 @@ function allocate_cache(alg::NewtonsMethod, x_prototype, j_prototype = nothing)
     )
 end
 
-solve_newton!(
-    alg::NewtonsMethod,
-    cache::Nothing,
-    x,
-    f!,
-    j! = nothing,
-    post_implicit! = nothing,
-    post_implicit_last! = nothing,
-) = nothing
-
-NVTX.@annotate function solve_newton!(
-    alg::NewtonsMethod,
-    cache,
-    x,
-    f!,
-    j! = nothing,
-    post_implicit! = nothing,
-    post_implicit_last! = nothing,
-)
+solve_newton!(alg::NewtonsMethod, cache::Nothing, x, f!, j! = nothing, prepare_for_f! = nothing) = nothing
+
+NVTX.@annotate function solve_newton!(alg::NewtonsMethod, cache, x, f!, j! = nothing, prepare_for_f! = nothing)
     (; max_iters, update_j, krylov_method, convergence_checker, verbose) = alg
     (; krylov_method_cache, convergence_checker_cache) = cache
     (; Δx, f, j) = cache
@@ -605,22 +589,18 @@ NVTX.@annotate function solve_newton!(
                 ldiv!(Δx, j, f)
             end
         else
-            solve_krylov!(krylov_method, krylov_method_cache, Δx, x, f!, f, n, post_implicit!, j)
+            solve_krylov!(krylov_method, krylov_method_cache, Δx, x, f!, f, n, prepare_for_f!, j)
         end
         is_verbose(verbose) && @info "Newton iteration $n: ‖x‖ = $(norm(x)), ‖Δx‖ = $(norm(Δx))"
 
         x .-= Δx
         # Update x[n] with Δx[n - 1], and exit the loop if Δx[n] is not needed.
         # Check for convergence if necessary.
         if is_converged!(convergence_checker, convergence_checker_cache, x, Δx, n)
-            isnothing(post_implicit_last!) || post_implicit_last!(x)
             break
-        elseif n == max_iters
-            isnothing(post_implicit_last!) || post_implicit_last!(x)
-        else
-            isnothing(post_implicit!) || post_implicit!(x)
-        end
-        if is_verbose(verbose) && n == max_iters
+        elseif n < max_iters
+            isnothing(prepare_for_f!) || prepare_for_f!(x)
+        elseif is_verbose(verbose)
             @warn "Newton's method did not converge within $n iterations: ‖x‖ = $(norm(x)), ‖Δx‖ = $(norm(Δx))"
         end
     end

src/solvers/hard_coded_ars343.jl

@@ -4,7 +4,7 @@ function step_u!(integrator, cache::IMEXARKCache, ::ARS343)
     (; u, p, t, dt, sol, alg) = integrator
     (; f) = sol.prob
     (; T_imp!, lim!, dss!) = f
-    (; post_explicit!, post_implicit!) = f
+    (; cache!, cache_imp!) = f
     (; tableau, newtons_method) = alg
     (; a_exp, b_exp, a_imp, b_imp, c_exp, c_imp) = tableau
     (; U, T_lim, T_exp, T_imp, temp, γ, newtons_method_cache) = cache
@@ -35,27 +35,27 @@ function step_u!(integrator, cache::IMEXARKCache, ::ARS343)
     @. temp = U # used in closures
     let i = i
         t_imp = t + dt * c_imp[i]
-        post_implicit!(U, p, t_imp)
+        cache_imp!(U, p, t_imp)
         implicit_equation_residual! = (residual, Ui) -> begin
             T_imp!(residual, Ui, p, t_imp)
             @. residual = temp + dt * a_imp[i, i] * residual - Ui
         end
         implicit_equation_jacobian! = (jacobian, Ui) -> begin
             T_imp!.Wfact(jacobian, Ui, p, dt * a_imp[i, i], t_imp)
         end
-        call_post_implicit! = Ui -> post_implicit!(Ui, p, t_imp)
+        call_cache_imp! = Ui -> cache_imp!(Ui, p, t_imp)
         solve_newton!(
             newtons_method,
             newtons_method_cache,
             U,
             implicit_equation_residual!,
             implicit_equation_jacobian!,
-            call_post_implicit!,
+            call_cache_imp!,
             nothing,
         )
         @. T_imp[i] = (U - temp) / (dt * a_imp[i, i])
         dss!(U, p, t_imp)
-        post_explicit!(U, p, t_imp)
+        cache!(U, p, t_imp)
     end
     T_lim!(T_lim[i], U, p, t_exp)
     T_exp!(T_exp[i], U, p, t_exp)
@@ -69,27 +69,27 @@ function step_u!(integrator, cache::IMEXARKCache, ::ARS343)
     @. temp = U # used in closures
     let i = i
         t_imp = t + dt * c_imp[i]
-        post_implicit!(U, p, t_imp)
+        cache_imp!(U, p, t_imp)
         implicit_equation_residual! = (residual, Ui) -> begin
             T_imp!(residual, Ui, p, t_imp)
             @. residual = temp + dt * a_imp[i, i] * residual - Ui
         end
         implicit_equation_jacobian! = (jacobian, Ui) -> begin
             T_imp!.Wfact(jacobian, Ui, p, dt * a_imp[i, i], t_imp)
         end
-        call_post_implicit! = Ui -> post_implicit!(Ui, p, t_imp)
+        call_cache_imp! = Ui -> cache_imp!(Ui, p, t_imp)
         solve_newton!(
             newtons_method,
             newtons_method_cache,
             U,
             implicit_equation_residual!,
             implicit_equation_jacobian!,
-            call_post_implicit!,
+            call_cache_imp!,
             nothing,
         )
         @. T_imp[i] = (U - temp) / (dt * a_imp[i, i])
         dss!(U, p, t_imp)
-        post_explicit!(U, p, t_imp)
+        cache!(U, p, t_imp)
     end
     T_lim!(T_lim[i], U, p, t_exp)
     T_exp!(T_exp[i], U, p, t_exp)
@@ -108,27 +108,27 @@ function step_u!(integrator, cache::IMEXARKCache, ::ARS343)
     @. temp = U # used in closures
     let i = i
         t_imp = t + dt * c_imp[i]
-        post_implicit!(U, p, t_imp)
+        cache_imp!(U, p, t_imp)
         implicit_equation_residual! = (residual, Ui) -> begin
             T_imp!(residual, Ui, p, t_imp)
             @. residual = temp + dt * a_imp[i, i] * residual - Ui
         end
         implicit_equation_jacobian! = (jacobian, Ui) -> begin
             T_imp!.Wfact(jacobian, Ui, p, dt * a_imp[i, i], t_imp)
         end
-        call_post_implicit! = Ui -> post_implicit!(Ui, p, t_imp)
+        call_cache_imp! = Ui -> cache_imp!(Ui, p, t_imp)
         solve_newton!(
             newtons_method,
             newtons_method_cache,
             U,
             implicit_equation_residual!,
             implicit_equation_jacobian!,
-            call_post_implicit!,
+            call_cache_imp!,
             nothing,
         )
         @. T_imp[i] = (U - temp) / (dt * a_imp[i, i])
         dss!(U, p, t_imp)
-        post_explicit!(U, p, t_imp)
+        cache!(U, p, t_imp)
     end
     T_lim!(T_lim[i], U, p, t_exp)
     T_exp!(T_exp[i], U, p, t_exp)
@@ -145,6 +145,6 @@ function step_u!(integrator, cache::IMEXARKCache, ::ARS343)
         dt * b_imp[3] * T_imp[3] +
         dt * b_imp[4] * T_imp[4]
     dss!(u, p, t_final)
-    post_explicit!(u, p, t_final)
+    cache!(u, p, t_final)
     return u
 end