Need

MSI analysis was requested to be included to the workflow in #972

Suggested approach

Add MSIsensor-pro. See https://github.com/xjtu-omics/msisensor-pro/wiki and Peng Jia, Xiaofei Yang, Li Guo, Bowen Liu, Jiadong Lin, Hao Liang, et al. MSIsensor-pro: fast, accurate, and matched-normal-sample-free detection of microsatellite instability. Genomics Proteomics Bioinformatics 2020,18(1). PDF for more details.

Considered alternatives

No response

Deviation

No response

System requirements assessed

• Yes, I have reviewed the system requirements

Requirements affected by this story

No response

Risk assessment needed

• Needed
• Not needed

Risk assessment

No response

SOUPs

No response

Can be closed when

No response

Blockers

No response

Anything else?

No response