Merge pull request #102 from moonso/parse-new-header-format

parse new header format

Author: Måns Magnusson

CHANGELOG.md

@@ -10,5 +10,8 @@ Try to use the following format:
 
 ## [x.x.x]
 
+### Changed
+- Adds support for escaped characters in FORMAT description header strings
+
 ### Fixed
 - Documentation about cli options `strict` and `phased`

genmod/vcf_tools/header_parser.py

@@ -59,8 +59,8 @@ def __init__(self):
             >''', re.VERBOSE)
         self.filter_pattern = re.compile(r'''\#\#FILTER=<
             ID=(?P<id>[^,]+),
-            Description="(?P<desc>[^"]*)"
-            >''', re.VERBOSE)
+            Description="(?P<desc>.+">$)
+            ''', re.VERBOSE)
         self.contig_pattern = re.compile(r'''\#\#contig=<
             ID=(?P<id>[^,]+)
             .*