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(genmod) ➜ genmod git:(master) ✗ genmod models -f examples/dominant_trio.ped -o examples/test_vcf_dominant_annotated.vcf examples/test_vcf_annotated.vcf
(genmod) ➜ genmod git:(master) ✗ genmod annotate -o examples/test_vcf_annotated.vcf --annotate_regions examples/test_vcf.vcf
genmod models -f examples/multi_family.ped -o examples/test_vcf_multi_annotated.vcf examples/test_vcf_annotated.vcf
Process VariantAnnotator-2:
Traceback (most recent call last):
File "/usr/local/miniconda3/envs/genmod/lib/python3.13/multiprocessing/process.py", line 313, in _bootstrap
self.run()
~~~~~~~~^^
File "/Users/dannil/.local/share/uv/tools/genmod/lib/python3.13/site-packages/genmod/annotate_models/variant_annotator.py", line 108, in run
variant["genotypes"] = get_genotypes(variant, self.individuals)
~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/dannil/.local/share/uv/tools/genmod/lib/python3.13/site-packages/genmod/vcf_tools/get_genotypes.py", line 23, in get_genotypes
gt_info = variant[individual].split(":")
~~~~~~~^^^^^^^^^^^^
KeyError: 'proband_2'
^CProcess VariantPrinter-6:
Aborted!
Traceback (most recent call last):
File "/usr/local/miniconda3/envs/genmod/lib/python3.13/multiprocessing/process.py", line 313, in _bootstrap
self.run()
~~~~~~~~^^
File "/Users/dannil/.local/share/uv/tools/genmod/lib/python3.13/site-packages/genmod/utils/variant_printer.py", line 68, in run
variant = self.task_queue.get()
File "<string>", line 2, in get
File "/usr/local/miniconda3/envs/genmod/lib/python3.13/multiprocessing/managers.py", line 824, in _callmethod
kind, result = conn.recv()
~~~~~~~~~^^
File "/usr/local/miniconda3/envs/genmod/lib/python3.13/multiprocessing/connection.py", line 250, in recv
buf = self._recv_bytes()
File "/usr/local/miniconda3/envs/genmod/lib/python3.13/multiprocessing/connection.py", line 430, in _recv_bytes
buf = self._recv(4)
File "/usr/local/miniconda3/envs/genmod/lib/python3.13/multiprocessing/connection.py", line 395, in _recv
chunk = read(handle, remaining)
KeyboardInterrupt
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