Remove hardcoded database name and update Pasteur service web URL for improved configuration

Author: karlnyr

microSALT/utils/pubmlst/get_credentials.py

@@ -7,9 +7,6 @@
 from microSALT.utils.pubmlst.helpers import get_path, get_service_config, folders_config
 from microSALT.utils.pubmlst.constants import CREDENTIALS_KEY
 
-db = "pubmlst_test_seqdef"
-
-
 def validate_credentials(client_id, client_secret):
     """Ensure client_id and client_secret are not empty."""
     if not client_id or not client_id.strip():

microSALT/utils/pubmlst/helpers.py

@@ -52,7 +52,7 @@ def get_service_config(service: str):
             "config": app.config["pubmlst"],
         },
         "pasteur": {
-            "base_web": "https://bigsdb.pasteur.fr",
+            "base_web": "https://bigsdb.pasteur.fr/bigsdb",
             "base_api": "https://bigsdb.pasteur.fr/api",
             "base_api_host": "bigsdb.pasteur.fr",
             "database": "pasteur_test_seqdef",