We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
1 parent 9338d50 commit 8a56468Copy full SHA for 8a56468
microSALT/utils/referencer.py
@@ -152,7 +152,12 @@ def fetch_external(self, force=False):
152
currver = self.db_access.get_version("profile_{}".format(organ))
153
st_link = entry.find("./mlst/database/profiles/url").text
154
service: str = get_service_by_url(st_link)
155
- self.set_client(service, database=organ)
+ if service == "pasteur":
156
+ database: str = organ.split("_")[0]
157
+ self.set_client(service, database=database)
158
+ else:
159
+ self.set_client(service)
160
+
161
# Parse the database name and scheme ID
162
try:
163
parsed_data = self.client.parse_url(url=st_link)
0 commit comments