Update Python version to 3.10 in workflows and dependencies

Author: karlnyr

.github/workflows/run_tests.yml

@@ -15,10 +15,10 @@ jobs:
 
     steps:
     - uses: actions/checkout@v4
-    - name: Set up Python 3.6
+    - name: Set up Python 3.10
       uses: actions/setup-python@v3
       with:
-        python-version: '3.6.15'
+        python-version: '3.10.13'
     - name: Create conda/mamba environment using micromamba
       uses: mamba-org/setup-micromamba@v1
       with:

environment.yml

@@ -4,12 +4,12 @@ channels:
   - bioconda
   - defaults
 dependencies:
-  - python=3.6
+  - python=3.10
   - blast=2.12.0
   - bwa=0.7.17
   - picard=2.20.3
   - pigz>=2.4
-  - quast=5.0.2
+  - quast=5.3.0
   - samtools=1.13
   - trimmomatic=0.39
   - r-base=4.1.1

setup.py

@@ -29,5 +29,5 @@
     entry_points={
         'console_scripts': ['microSALT=microSALT.cli:root'],
     },
-)
-
+    python_requires='>=3.10',
+)