Issues in microSALT storing has resulted in many analysis obj in StatusDB having the incorrect workflow version 0.0.0

[karlnyr]

Storing can't process correctly if the database is locked (for example caused by an analysis start) as it tries to fetch the microSALT version from the pipeline.

linked file: /home/proj/production/microbial/results/ACC17038_2025.3.9_13.52.15/ACC17038A88/assembly/quast/ACC17038A88_report.tsv -> /home/proj/production/housekeeper-bundles/usablerobin/2025-03-09/ACC17038A88_report.tsv
linked file: /home/proj/production/microbial/results/ACC17038_2025.3.9_13.52.15/ACC17038A88/alignment/ACC17038A88_NC_000913.3.bam_sort -> /home/proj/production/housekeeper-bundles/usablerobin/2025-03-09/ACC17038A88_NC_000913.3.bam_sort
linked file: /home/proj/production/microbial/results/ACC17038_2025.3.9_13.52.15/ACC17038A88/alignment/ACC17038A88_NC_000913.3.stats.ins -> /home/proj/production/housekeeper-bundles/usablerobin/2025-03-09/ACC17038A88_NC_000913.3.stats.ins
Analysis successfully stored in Housekeeper: usablerobin (2025-03-09 15:24:06)
Storing analysis in StatusDB for usablerobin
Found deliverables file /home/proj/production/microbial/results/reports/deliverables/1002665_deliverables.yaml
Running command /home/proj/production/bin/miniconda3/bin/conda run --name P_microSALT /home/proj/production/bin/miniconda3/envs/P_microSALT/bin/microSALT --version
Call ['/home/proj/production/bin/miniconda3/bin/conda run --name P_microSALT', '/home/proj/production/bin/miniconda3/envs/P_microSALT/bin/microSALT', '--version'] exit with a non zero exit code
Error: in prepare, database is locked (5)
ERROR - Database integrity failed! Lock-state detected!

ERROR conda.cli.main_run:execute(124): `conda run /home/proj/production/bin/miniconda3/envs/P_microSALT/bin/microSALT --version` failed. (See above for error)
Could not retrieve microsalt workflow version!
Analysis successfully stored in StatusDB: usablerobin : 2025-03-09 15:24:06
Action None set for case usablerobin

Part of the issue here is that calling microSALT will try to instantiate the database. A fix for this would be to move the instantiation of the app to a function, and then call that function in the appropriate cli calls