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| 2 |[Data set Preparation and Basic Statistics](https://htmlpreview.github.io/?https://github.com/CogStack/MedCATtutorials/blob/main/notebooks/introductory/Part_2_Dataset_Analysis_and_Preparation.html)|[](https://colab.research.google.com/github/CogStack/MedCATtutorials/blob/main/notebooks/introductory/Part_2_Dataset_Analysis_and_Preparation.ipynb)|[TDS](https://towardsdatascience.com/medcat-dataset-analysis-and-preparation-be8bc910bd6d)|
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| 3.1 |[Building a new Concept Database (CDB) and Vocabulary (Vocab)](https://htmlpreview.github.io/?https://github.com/CogStack/MedCATtutorials/blob/main/notebooks/introductory/Part_3_1_Building_a_Concept_Database_and_Vocabulary.html)|[](https://colab.research.google.com/github/CogStack/MedCATtutorials/blob/main/notebooks/introductory/Part_3_1_Building_a_Concept_Database_and_Vocabulary.ipynb)|[TDS](https://towardsdatascience.com/medcat-extracting-diseases-from-electronic-health-records-f53c45b3d1c1)|
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| 3.2 |[Unsupervised training and NER+L](https://htmlpreview.github.io/?https://github.com/CogStack/MedCATtutorials/blob/main/notebooks/introductory/Part_3_2_Extracting_Diseases_from_Electronic_Health_Records.html)|[](https://colab.research.google.com/github/CogStack/MedCATtutorials/blob/main/notebooks/introductory/Part_3_2_Extracting_Diseases_from_Electronic_Health_Records.ipynb)|[TDS](https://towardsdatascience.com/medcat-extracting-diseases-from-electronic-health-records-f53c45b3d1c1)|
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| 2 |[Data set Preparation and Basic Statistics](https://htmlpreview.github.io/?https://github.com/CogStack/MedCATtutorials/blob/main/notebooks/introductory/Part_2_Dataset_Analysis_and_Preparation.html)|[](https://colab.research.google.com/github/CogStack/MedCATtutorials/blob/main/notebooks/introductory/Part_2_Dataset_Analysis_and_Preparation.ipynb)|[TDS](https://medium.com/towards-data-science/medcat-dataset-analysis-and-preparation-be8bc910bd6d)|
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| 3.1 |[Building a new Concept Database (CDB) and Vocabulary (Vocab)](https://htmlpreview.github.io/?https://github.com/CogStack/MedCATtutorials/blob/main/notebooks/introductory/Part_3_1_Building_a_Concept_Database_and_Vocabulary.html)|[](https://colab.research.google.com/github/CogStack/MedCATtutorials/blob/main/notebooks/introductory/Part_3_1_Building_a_Concept_Database_and_Vocabulary.ipynb)|[TDS](https://medium.com/towards-data-science/medcat-extracting-diseases-from-electronic-health-records-f53c45b3d1c1)|
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| 3.2 |[Unsupervised training and NER+L](https://htmlpreview.github.io/?https://github.com/CogStack/MedCATtutorials/blob/main/notebooks/introductory/Part_3_2_Extracting_Diseases_from_Electronic_Health_Records.html)|[](https://colab.research.google.com/github/CogStack/MedCATtutorials/blob/main/notebooks/introductory/Part_3_2_Extracting_Diseases_from_Electronic_Health_Records.ipynb)|[TDS](https://medium.com/towards-data-science/medcat-extracting-diseases-from-electronic-health-records-f53c45b3d1c1)|
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| 3.3 |[Technical model optimisations](https://htmlpreview.github.io/?https://github.com/CogStack/MedCATtutorials/blob/main/notebooks/introductory/Part_3_3_Model_technical_optimisations.html)|[](https://colab.research.google.com/github/CogStack/MedCATtutorials/blob/main/notebooks/introductory/Part_3_3_Model_technical_optimisations.ipynb)| - |
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| 4.1 |[Creating a tokenizer model (huggingface) and embeddings for MetaAnnotations](https://htmlpreview.github.io/?https://github.com/CogStack/MedCATtutorials/blob/main/notebooks/introductory/Part_4_1_ByteLevelBPETokenizer_and_Embeddings.html)|[](https://colab.research.google.com/github/CogStack/MedCATtutorials/blob/main/notebooks/introductory/Part_4_1_ByteLevelBPETokenizer_and_Embeddings.ipynb)| - |
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| 4.2 |[Supervised training and fine-tuning + Meta-annotations](https://htmlpreview.github.io/?https://github.com/CogStack/MedCATtutorials/blob/main/notebooks/introductory/Part_4_2_Supervised_Training_and_Meta_annotations.html)|[](https://colab.research.google.com/github/CogStack/MedCATtutorials/blob/main/notebooks/introductory/Part_4_2_Supervised_Training_and_Meta_annotations.ipynb)| - |
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| 4.3 |[Annotating documents with the full MedCAT pipeline with MetaAnnotations](https://htmlpreview.github.io/?https://github.com/CogStack/MedCATtutorials/blob/main/notebooks/introductory/Part_4_3_Annotating_documents_with_the_full_MedCAT_pipeline_with_MetaAnnotations.html)|[](https://colab.research.google.com/github/CogStack/MedCATtutorials/blob/main/notebooks/introductory/Part_4_3_Annotating_documents_with_the_full_MedCAT_pipeline_with_MetaAnnotations.ipynb)| - |
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| 5 |[Analysing the results](https://htmlpreview.github.io/?https://github.com/CogStack/MedCATtutorials/blob/main/notebooks/introductory/Part_5_Prevalence_of_Physical_and_Mental_Diseases.html)|[](https://colab.research.google.com/github/CogStack/MedCATtutorials/blob/main/notebooks/introductory/Part_5_Prevalence_of_Physical_and_Mental_Diseases.ipynb)|[TDS](https://towardsdatascience.com/prevalence-of-physical-and-mental-diseases-450c0f4f5851)|
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| 5 |[Analysing the results](https://htmlpreview.github.io/?https://github.com/CogStack/MedCATtutorials/blob/main/notebooks/introductory/Part_5_Prevalence_of_Physical_and_Mental_Diseases.html)|[](https://colab.research.google.com/github/CogStack/MedCATtutorials/blob/main/notebooks/introductory/Part_5_Prevalence_of_Physical_and_Mental_Diseases.ipynb)|[TDS](https://medium.com/@w_is_h/prevalence-of-physical-and-mental-diseases-450c0f4f5851)|
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