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ops: Creating Helm Chart for Medcat Trainer. Initial k8s manifests
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‎deployment/kubernetes/charts/medcat-trainer-helm/api-db-backup-persistentvolumeclaim.yaml‎

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apiVersion: v1
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kind: PersistentVolumeClaim
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metadata:
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labels:
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io.kompose.service: api-db-backup
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name: api-db-backup
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spec:
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accessModes:
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- ReadWriteOnce
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resources:
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requests:
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storage: 100Mi

‎deployment/kubernetes/charts/medcat-trainer-helm/api-db-persistentvolumeclaim.yaml‎

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apiVersion: v1
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kind: PersistentVolumeClaim
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metadata:
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labels:
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io.kompose.service: api-db
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name: api-db
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spec:
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accessModes:
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- ReadWriteOnce
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resources:
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requests:
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storage: 100Mi

‎deployment/kubernetes/charts/medcat-trainer-helm/api-media-persistentvolumeclaim.yaml‎

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apiVersion: v1
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kind: PersistentVolumeClaim
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metadata:
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labels:
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io.kompose.service: api-media
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name: api-media
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spec:
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accessModes:
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- ReadWriteOnce
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resources:
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requests:
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storage: 100Mi

‎deployment/kubernetes/charts/medcat-trainer-helm/api-static-persistentvolumeclaim.yaml‎

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apiVersion: v1
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kind: PersistentVolumeClaim
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metadata:
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labels:
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io.kompose.service: api-static
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name: api-static
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spec:
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accessModes:
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- ReadWriteOnce
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resources:
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requests:
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storage: 100Mi

‎deployment/kubernetes/charts/medcat-trainer-helm/env-configmap.yaml‎

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apiVersion: v1
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data:
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CONCEPT_SEARCH_SERVICE_HOST: solr
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CONCEPT_SEARCH_SERVICE_PORT: "8983"
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CSRF_TRUSTED_ORIGINS: ""
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DB_BACKUP_DIR: /home/api/db-backup
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DB_DIR: /home/api/db
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DB_PATH: /home/api/db/db.sqlite3
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DEBUG: "1"
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EMAIL_HOST: mail.cogstack.org
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EMAIL_PASS: to be changed
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EMAIL_PORT: "465"
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EMAIL_USER: [email protected]
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ENV: non-prod
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LOAD_EXAMPLES: "1"
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LOAD_NUM_DOC_PAGES: "10"
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MAX_DATASET_SIZE: "10000"
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MAX_MEDCAT_MODELS: "2"
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MEDCAT_CONFIG_FILE: /home/configs/base.txt
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OPENBLAS_NUM_THREADS: "1"
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RESUBMIT_ALL_ON_STARTUP: "0"
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UNIQUE_DOC_NAMES_IN_DATASETS: "True"
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kind: ConfigMap
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metadata:
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labels:
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io.kompose.service: medcattrainer-env
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name: env

‎deployment/kubernetes/charts/medcat-trainer-helm/medcattrainer-claim4-persistentvolumeclaim.yaml‎

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apiVersion: v1
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kind: PersistentVolumeClaim
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metadata:
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labels:
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io.kompose.service: medcattrainer-claim4
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name: medcattrainer-claim4
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spec:
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accessModes:
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- ReadWriteOnce
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resources:
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requests:
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storage: 100Mi

‎deployment/kubernetes/charts/medcat-trainer-helm/medcattrainer-claim5-persistentvolumeclaim.yaml‎

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apiVersion: v1
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kind: PersistentVolumeClaim
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metadata:
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labels:
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io.kompose.service: medcattrainer-claim5
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name: medcattrainer-claim5
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spec:
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accessModes:
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- ReadWriteOnce
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resources:
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requests:
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storage: 100Mi

‎deployment/kubernetes/charts/medcat-trainer-helm/medcattrainer-deployment.yaml‎

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apiVersion: apps/v1
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kind: Deployment
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metadata:
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annotations:
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kompose.cmd: kompose convert --file docker-compose.yml
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kompose.version: 1.34.0 (cbf2835db)
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labels:
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io.kompose.service: medcattrainer
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name: medcattrainer
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spec:
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replicas: 1
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selector:
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matchLabels:
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io.kompose.service: medcattrainer
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strategy:
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type: Recreate
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template:
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metadata:
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annotations:
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kompose.cmd: kompose convert --file docker-compose.yml
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kompose.version: 1.34.0 (cbf2835db)
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labels:
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io.kompose.service: medcattrainer
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spec:
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containers:
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- args:
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- /usr/bin/supervisord
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- -c
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- /etc/supervisord.conf
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env:
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- name: CONCEPT_SEARCH_SERVICE_HOST
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valueFrom:
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configMapKeyRef:
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key: CONCEPT_SEARCH_SERVICE_HOST
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name: env
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- name: CONCEPT_SEARCH_SERVICE_PORT
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valueFrom:
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configMapKeyRef:
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key: CONCEPT_SEARCH_SERVICE_PORT
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name: env
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- name: CSRF_TRUSTED_ORIGINS
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valueFrom:
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configMapKeyRef:
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key: CSRF_TRUSTED_ORIGINS
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name: env
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- name: DB_BACKUP_DIR
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valueFrom:
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configMapKeyRef:
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key: DB_BACKUP_DIR
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name: env
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- name: DB_DIR
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valueFrom:
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configMapKeyRef:
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key: DB_DIR
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name: env
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- name: DB_PATH
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valueFrom:
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configMapKeyRef:
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key: DB_PATH
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name: env
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- name: DEBUG
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valueFrom:
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configMapKeyRef:
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key: DEBUG
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name: env
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- name: EMAIL_HOST
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valueFrom:
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configMapKeyRef:
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key: EMAIL_HOST
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name: env
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- name: EMAIL_PASS
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valueFrom:
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configMapKeyRef:
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key: EMAIL_PASS
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name: env
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- name: EMAIL_PORT
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valueFrom:
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configMapKeyRef:
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key: EMAIL_PORT
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name: env
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- name: EMAIL_USER
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valueFrom:
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configMapKeyRef:
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key: EMAIL_USER
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name: env
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- name: ENV
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valueFrom:
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configMapKeyRef:
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key: ENV
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name: env
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- name: LOAD_EXAMPLES
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valueFrom:
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configMapKeyRef:
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key: LOAD_EXAMPLES
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name: env
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- name: LOAD_NUM_DOC_PAGES
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valueFrom:
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configMapKeyRef:
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key: LOAD_NUM_DOC_PAGES
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name: env
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- name: MAX_DATASET_SIZE
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valueFrom:
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configMapKeyRef:
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key: MAX_DATASET_SIZE
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name: env
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- name: MAX_MEDCAT_MODELS
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valueFrom:
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configMapKeyRef:
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key: MAX_MEDCAT_MODELS
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name: env
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- name: MCT_VERSION
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value: v2.22.1
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- name: MEDCAT_CONFIG_FILE
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valueFrom:
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configMapKeyRef:
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key: MEDCAT_CONFIG_FILE
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name: env
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- name: OPENBLAS_NUM_THREADS
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valueFrom:
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configMapKeyRef:
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key: OPENBLAS_NUM_THREADS
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name: env
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- name: RESUBMIT_ALL_ON_STARTUP
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valueFrom:
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configMapKeyRef:
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key: RESUBMIT_ALL_ON_STARTUP
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name: env
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- name: UNIQUE_DOC_NAMES_IN_DATASETS
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valueFrom:
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configMapKeyRef:
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key: UNIQUE_DOC_NAMES_IN_DATASETS
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name: env
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image: cogstacksystems/medcat-trainer:v2.22.1
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name: medcattrainer
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volumeMounts:
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- mountPath: /home/api/media
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name: api-media
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- mountPath: /home/api/static
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name: api-static
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- mountPath: /home/api/db
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name: api-db
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- mountPath: /home/api/db-backup
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name: api-db-backup
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- mountPath: /home/configs
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name: medcattrainer-claim4
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- name: supervisord-config
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mountPath: /etc/supervisord.conf
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subPath: supervisord.conf # <-- ensures it's a file, not a folder
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restartPolicy: Always
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volumes:
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- name: supervisord-config
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configMap:
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name: supervisord-config
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- name: api-media
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persistentVolumeClaim:
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claimName: api-media
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- name: api-static
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persistentVolumeClaim:
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claimName: api-static
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- name: api-db
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persistentVolumeClaim:
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claimName: api-db
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- name: api-db-backup
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persistentVolumeClaim:
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claimName: api-db-backup
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- name: medcattrainer-claim4
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persistentVolumeClaim:
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claimName: medcattrainer-claim4
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- name: medcattrainer-claim5
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persistentVolumeClaim:
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claimName: medcattrainer-claim5

‎deployment/kubernetes/charts/medcat-trainer-helm/medcattrainer-service.yaml‎

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apiVersion: v1
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kind: Service
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metadata:
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annotations:
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kompose.cmd: kompose convert --file docker-compose.yml
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kompose.version: 1.34.0 (cbf2835db)
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labels:
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io.kompose.service: medcattrainer
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name: medcattrainer
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spec:
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ports:
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- name: "8000"
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port: 8000
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targetPort: 8000
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selector:
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io.kompose.service: medcattrainer

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