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lines changed Original file line number Diff line number Diff line change @@ -101,18 +101,19 @@ harmonicWalls {
101101 outputEnergy yes
102102 outputAccumulatedWork yes
103103}
104- #_harmonic walls with changing force constant
104+ #_harmonic wall with changing force constant: RFEP
105+ # (Restraint Free Energy Perturbation)
105106harmonicWalls {
106- colvars <names>
107+ colvars <names>
107108
108- lowerWalls 0.1
109- upperWalls 0.2
110- forceConstant 10.0
109+ upperWalls 10.0
110+ forceConstant 200.0
111111
112- targetForceconstant 0.0001
113- targetNumSteps 10
114- outputEnergy yes
115- outputAccumulatedWork yes
112+ decoupling yes
113+ lambdaExponent 4 # Nonlinear scaling of the force constant
114+ targetNumSteps 10000
115+ targetNumStages 40
116+ outputEnergy yes
116117}
117118#_histogram
118119histogram {
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