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Dashboard: Improved RFEP bias template
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vmd/cv_dashboard/templates/bias.colvars

Lines changed: 10 additions & 9 deletions
Original file line numberDiff line numberDiff line change
@@ -101,18 +101,19 @@ harmonicWalls {
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outputEnergy yes
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outputAccumulatedWork yes
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}
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#_harmonic walls with changing force constant
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#_harmonic wall with changing force constant: RFEP
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# (Restraint Free Energy Perturbation)
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harmonicWalls {
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colvars <names>
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colvars <names>
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lowerWalls 0.1
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upperWalls 0.2
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forceConstant 10.0
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upperWalls 10.0
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forceConstant 200.0
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targetForceconstant 0.0001
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targetNumSteps 10
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outputEnergy yes
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outputAccumulatedWork yes
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decoupling yes
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lambdaExponent 4 # Nonlinear scaling of the force constant
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targetNumSteps 10000
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targetNumStages 40
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outputEnergy yes
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}
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#_histogram
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histogram {

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