BREAK: remove symplot (#485)

* BREAK: move `symplot` to `ampform.sympy.slider`
* BREAK: remove `SliderKwargs` etc
* DOC: widen cell output for wide formulas
* DOC: write Issues instead of Tracker in PyPI
* DX: define `test-all` task
* DX: include `uv.lock` in VS Code search
* DX: outsource lock upgrades to Dependabot
* DX: run all CI tasks through `poe`
* DX: switch to `ty` as type checker
* DX: use Poe the Poet executor options
* ENH: extend value type of dict
* ENH: support MathJax in bibliography
* ENH: widen key type of `kinematic_variables`
* MAINT: apply new Ruff formatting
* MAINT: remove `from __future__ import annotations` from notebooks
* MAINT: remove install cells
* MAINT: remove `mpl-interactions`
* MAINT: remove mpl figure format magic call
* MAINT: remove redundant init files under `tests/`
* MAINT: remove whitespace from cells
* MAINT: update bibliography style and citation keys
* MAINT: update Jupyter kernels
* MAINT: update test hashes
* MAINT: upgrade lock files and dev files

Co-authored-by: Remco de Boer <29308176+redeboer@users.noreply.github.com>

Author: pre-commit-ci[bot]

.cspell.json

@@ -25,6 +25,7 @@
     "*.ico",
     ".editorconfig",
     ".envrc",
+    ".github/dependabot.yml",
     ".gitignore",
     ".pre-commit-config.yaml",
     ".prettierignore",
@@ -40,7 +41,6 @@
   "ignoreWords": [
     "Autoupdate",
     "Dalitzplot",
-    "MAINT",
     "Minkowski",
     "PYDEVD",
     "adrs",
@@ -53,6 +53,8 @@
     "automodule",
     "axhline",
     "axvline",
+    "backend_nbagg",
+    "bbox",
     "bbox_to_anchor",
     "bdist",
     "bgcolor",
@@ -71,7 +73,6 @@
     "compwa",
     "concat",
     "conds",
-    "coolwarm",
     "displaystyle",
     "dlink",
     "docnb",
@@ -109,6 +110,7 @@
     "imag",
     "iplt",
     "ipykernel",
+    "ipympl",
     "ipyplot",
     "ipywidgets",
     "isfunction",
@@ -171,9 +173,9 @@
     "pylance",
     "pypi",
     "pyproject",
-    "pyright",
     "pytestconfig",
     "rankdir",
+    "relim",
     "repr",
     "richman",
     "rightarrow",
@@ -189,10 +191,10 @@
     "sympifiable",
     "sympified",
     "sympify",
-    "symplot",
     "theano",
     "ticklabels",
     "tolist",
+    "tqdm",
     "unparse",
     "unsrt",
     "untracked",
@@ -211,6 +213,7 @@
     "xticks",
     "xytext",
     "yaxis",
+    "ydata",
     "ylabel",
     "ylim",
     "yticks"
@@ -267,7 +270,6 @@
     "mathbb",
     "matplotlib",
     "Mikhasenko",
-    "mypy",
     "nishijima",
     "numpy",
     "parametrizations",

.github/dependabot.yml

@@ -0,0 +1,19 @@
+version: 2
+
+multi-ecosystem-groups:
+  lock:
+    assignees: [redeboer]
+    commit-message: { prefix: MAINT }
+    schedule: { interval: quarterly }
+
+updates:
+  - package-ecosystem: github-actions
+    directory: "/"
+    labels: [⬆️ Lock]
+    multi-ecosystem-group: lock
+    patterns: ["*"]
+  - package-ecosystem: uv
+    directory: "/"
+    labels: [⬆️ Lock]
+    multi-ecosystem-group: lock
+    patterns: ["*"]

.github/workflows/benchmark.yml

@@ -12,45 +12,21 @@ on:
       - main
       - epic/*
   workflow_dispatch:
-    inputs:
-      specific-pip-packages:
-        description: Run benchmarks with specific pip packages
-        required: false
-        type: string
 
 jobs:
   benchmark:
     name: Performance regression
     runs-on: ubuntu-24.04
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v6
         with:
           fetch-depth: 0
-      - uses: actions/setup-python@v5
+      - uses: actions/setup-python@v6
         with:
           python-version: "3.13"
-      - uses: astral-sh/setup-uv@v5
-      - id: with
-        if: inputs.specific-pip-packages
-        name: Determine additional packages to install
-        run: |
-          additional_packages=''
-          for package in ${{ inputs.specific-pip-packages }}; do
-            additional_packages="$additional_packages --with $package"
-          done
-          echo "packages=$additional_packages" | tee -a $GITHUB_OUTPUT
+      - uses: astral-sh/setup-uv@v7
       - name: Run pytest-benchmark
-        run: |
-          uv run \
-            --all-extras \
-            --group test \
-            --no-dev \
-            ${{ steps.with.outputs.packages }} \
-            pytest \
-              -k benchmark \
-              --benchmark-json output.json \
-              --durations=0
-        working-directory: benchmarks
+        run: uvx --from poethepoet poe benchmark
       - name: Warn on performance decrease
         if: github.event_name == 'pull_request'
         uses: benchmark-action/github-action-benchmark@v1

.github/workflows/cd.yml

@@ -9,9 +9,9 @@ on:
 jobs:
   milestone:
     if: startsWith(github.ref, 'refs/tags')
-    uses: ComPWA/actions/.github/workflows/close-milestone.yml@v3
+    uses: ComPWA/actions/.github/workflows/close-milestone.yml@v4
   package-name:
-    uses: ComPWA/actions/.github/workflows/get-pypi-name.yml@v3
+    uses: ComPWA/actions/.github/workflows/get-pypi-name.yml@v4
   pypi:
     environment:
       name: PyPI
@@ -24,9 +24,9 @@ jobs:
       id-token: write
     runs-on: ubuntu-24.04
     steps:
-      - uses: ComPWA/actions/build-pypi-distribution@v3
+      - uses: ComPWA/actions/build-pypi-distribution@v4
       - uses: pypa/gh-action-pypi-publish@release/v1
   push:
     if: startsWith(github.ref, 'refs/tags') && !github.event.release.prerelease
     secrets: inherit
-    uses: ComPWA/actions/.github/workflows/push-to-version-branches.yml@v3
+    uses: ComPWA/actions/.github/workflows/push-to-version-branches.yml@v4

.github/workflows/ci-qrules-v0.9.yml

@@ -22,13 +22,13 @@ jobs:
     name: Run unit tests
     runs-on: ubuntu-24.04
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v6
         with:
           fetch-depth: 0
-      - uses: actions/setup-python@v5
+      - uses: actions/setup-python@v6
         with:
           python-version: "3.13"
-      - uses: astral-sh/setup-uv@v5
+      - uses: astral-sh/setup-uv@v7
       - name: Run pytest with QRules v0.9
         run: |
           uv run \

.github/workflows/ci.yml

@@ -17,31 +17,23 @@ on:
       - epic/*
       - "[0-9]+.[0-9]+.x"
   workflow_dispatch:
-    inputs:
-      specific-pip-packages:
-        description: Run CI with specific pip packages
-        required: false
-        type: string
 
 jobs:
   doc:
-    uses: ComPWA/actions/.github/workflows/ci-docs.yml@v3.0
+    uses: ComPWA/actions/.github/workflows/ci-docs.yml@v4.0
     permissions:
       pages: write
       id-token: write
     with:
       apt-packages: graphviz
-      specific-pip-packages: ${{ inputs.specific-pip-packages }}
-  pytest:
-    uses: ComPWA/actions/.github/workflows/pytest.yml@v3.0
-    with:
-      coverage-target: ampform
-      macos-python-version: "3.10"
-      specific-pip-packages: ${{ inputs.specific-pip-packages }}
-    secrets:
-      CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
   style:
-    if: inputs.specific-pip-packages == ''
     secrets:
       token: ${{ secrets.PAT }}
-    uses: ComPWA/actions/.github/workflows/pre-commit.yml@v3.0
+    uses: ComPWA/actions/.github/workflows/style.yml@v4.0
+  test:
+    uses: ComPWA/actions/.github/workflows/test.yml@v4.0
+    secrets:
+      CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
+    with:
+      coverage-python-version: "3.13"
+      macos-python-version: "3.10"

.github/workflows/clean-caches.yml

@@ -14,9 +14,9 @@ on:
 jobs:
   cleanup:
     name: Remove caches
-    runs-on: ubuntu-24.04
+    runs-on: ubuntu-slim
     steps:
-      - uses: ComPWA/actions/clean-caches@v3
+      - uses: ComPWA/actions/clean-caches@v4
         with:
           GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
           ref: ${{ inputs.ref }}

.github/workflows/lock.yml

@@ -17,6 +17,6 @@ on:
 
 jobs:
   lock:
-    uses: ComPWA/actions/.github/workflows/lock.yml@v3
+    uses: ComPWA/actions/.github/workflows/lock.yml@v4
     secrets:
       token: ${{ secrets.PAT }}

.github/workflows/pr-linting.yml

@@ -11,4 +11,4 @@ on:
 
 jobs:
   lint-pr:
-    uses: ComPWA/actions/.github/workflows/pr-linting.yml@v3
+    uses: ComPWA/actions/.github/workflows/pr-linting.yml@v4

.github/workflows/redirect-gh-pages.yml

@@ -7,7 +7,7 @@ on:
 
 jobs:
   build:
-    runs-on: ubuntu-24.04
+    runs-on: ubuntu-slim
     steps:
       - name: Build redirect page
         id: build
@@ -26,7 +26,7 @@ jobs:
           </body>
           </html>' > build/index.html
       - id: deployment
-        uses: actions/upload-pages-artifact@v3
+        uses: actions/upload-pages-artifact@v4
         with:
           path: build/