Skip to content

Commit 21c54e7

Browse files
author
Mark Jensen
committed
Updated MRO, new RO import module, added version IRIs, RO changes document.
1 parent e0e329b commit 21c54e7

21 files changed

+4494
-3940
lines changed

.gitignore

Lines changed: 2 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -1,3 +1,4 @@
11
catalog-v001.xml
22
\results
3-
\mro
3+
\build
4+
*.py

AgentOntology.ttl

Lines changed: 4 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -1,24 +1,24 @@
11
@prefix : <http://www.ontologyrepository.com/CommonCoreOntologies/Mid/AgentOntology/> .
2-
@prefix dc: <http://purl.org/dc/elements/1.1/> .
32
@prefix cco: <http://www.ontologyrepository.com/CommonCoreOntologies/> .
43
@prefix obo: <http://purl.obolibrary.org/obo/> .
54
@prefix owl: <http://www.w3.org/2002/07/owl#> .
65
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
76
@prefix xml: <http://www.w3.org/XML/1998/namespace> .
87
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
9-
@prefix foaf: <http://xmlns.com/foaf/0.1/> .
108
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
119
@base <http://www.ontologyrepository.com/CommonCoreOntologies/Mid/AgentOntology> .
1210

1311
<http://www.ontologyrepository.com/CommonCoreOntologies/Mid/AgentOntology> rdf:type owl:Ontology ;
12+
owl:versionIRI <http://www.ontologyrepository.com/CommonCoreOntologies/Mid/2019-05-02/AgentOntology> ;
1413
owl:imports <http://www.ontologyrepository.com/CommonCoreOntologies/Mid/InformationEntityOntology> ;
1514
cco:code_license "The 3-Clause BSD License: https://opensource.org/licenses/BSD-3-Clause"^^xsd:string ;
1615
cco:content_license "The Creative Commons BY 3.0 License: https://creativecommons.org/licenses/by/3.0/"^^xsd:string ;
1716
cco:copyright "COPYRIGHT © 2015-2019 CUBRC, Inc."^^xsd:string ;
1817
rdfs:comment "This ontology is designed to represent agents, especially persons and organizations, and their roles."^^xsd:string ;
1918
rdfs:label "Agent Ontology"^^xsd:string ;
20-
owl:versionInfo "April 4, 2019"^^xsd:string ,
19+
owl:versionInfo "May 2, 2019"^^xsd:string ,
2120
"Version 1.1.2"^^xsd:string .
21+
2222
#################################################################
2323
# Object Properties
2424
#################################################################
@@ -1842,4 +1842,4 @@ cco:UnalliedPerson rdf:type owl:Class ;
18421842
rdfs:label "Neutral"^^xsd:string .
18431843

18441844

1845-
### Generated by the OWL API (version 4.5.9.2019-02-01T07:24:44Z) https://github.com/owlcs/owlapi
1845+
### Generated by the OWL API (version 4.5.6) https://github.com/owlcs/owlapi

AllCoreOntology.ttl

Lines changed: 4 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -1,5 +1,6 @@
11
@prefix : <http://www.ontologyrepository.com/CommonCoreOntologies/Mid/AllCoreOntology/> .
22
@prefix cco: <http://www.ontologyrepository.com/CommonCoreOntologies/> .
3+
@prefix obo: <http://purl.obolibrary.org/obo/> .
34
@prefix owl: <http://www.w3.org/2002/07/owl#> .
45
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
56
@prefix xml: <http://www.w3.org/XML/1998/namespace> .
@@ -8,6 +9,7 @@
89
@base <http://www.ontologyrepository.com/CommonCoreOntologies/Mid/AllCoreOntology> .
910

1011
<http://www.ontologyrepository.com/CommonCoreOntologies/Mid/AllCoreOntology> rdf:type owl:Ontology ;
12+
owl:versionIRI <http://www.ontologyrepository.com/CommonCoreOntologies/Mid/2019-05-02/AllCoreOntology> ;
1113
owl:imports <http://www.ontologyrepository.com/CommonCoreOntologies/Mid/AgentOntology> ,
1214
<http://www.ontologyrepository.com/CommonCoreOntologies/Mid/ArtifactOntology> ,
1315
<http://www.ontologyrepository.com/CommonCoreOntologies/Mid/EventOntology> ,
@@ -16,7 +18,7 @@
1618
cco:copyright "COPYRIGHT © 2015-2019 CUBRC, Inc."^^xsd:string ;
1719
rdfs:comment "An import of all the Common Core mid-level ontologies into a single file so that content is easy to view. The All Core Ontology is not an ontology in the sense it contains no unique content. As such it should not be added to, but can be extended from."^^xsd:string ;
1820
rdfs:label "All Core Ontology"^^xsd:string ;
19-
owl:versionInfo "April 4, 2019"^^xsd:string ,
21+
owl:versionInfo "May 2, 2019"^^xsd:string ,
2022
"Version 1.1.2"^^xsd:string .
2123

22-
### Generated by the OWL API (version 4.5.9.2019-02-01T07:24:44Z) https://github.com/owlcs/owlapi
24+
### Generated by the OWL API (version 4.5.6) https://github.com/owlcs/owlapi

ArtifactOntology.ttl

Lines changed: 3 additions & 5 deletions
Original file line numberDiff line numberDiff line change
@@ -1,24 +1,22 @@
11
@prefix : <http://www.ontologyrepository.com/CommonCoreOntologies/Mid/ArtifactOntology/> .
2-
@prefix dc: <http://purl.org/dc/elements/1.1/> .
3-
@prefix bfo: <http://purl.obolibrary.org/obo#> .
42
@prefix cco: <http://www.ontologyrepository.com/CommonCoreOntologies/> .
53
@prefix obo: <http://purl.obolibrary.org/obo/> .
64
@prefix owl: <http://www.w3.org/2002/07/owl#> .
75
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
86
@prefix xml: <http://www.w3.org/XML/1998/namespace> .
97
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
10-
@prefix foaf: <http://xmlns.com/foaf/0.1/> .
118
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
129
@base <http://www.ontologyrepository.com/CommonCoreOntologies/Mid/ArtifactOntology> .
1310

1411
<http://www.ontologyrepository.com/CommonCoreOntologies/Mid/ArtifactOntology> rdf:type owl:Ontology ;
12+
owl:versionIRI <http://www.ontologyrepository.com/CommonCoreOntologies/Mid/2019-05-02/ArtifactOntology> ;
1513
owl:imports <http://www.ontologyrepository.com/CommonCoreOntologies/Mid/InformationEntityOntology> ;
1614
cco:code_license "The 3-Clause BSD License: https://opensource.org/licenses/BSD-3-Clause"^^xsd:string ;
1715
cco:content_license "The Creative Commons BY 3.0 License: https://creativecommons.org/licenses/by/3.0/"^^xsd:string ;
1816
cco:copyright "COPYRIGHT © 2015-2019 CUBRC, Inc."^^xsd:string ;
1917
rdfs:comment "This ontology is designed to represent artifacts that are common to multiple domains along with their models, specifications, and functions."^^xsd:string ;
2018
rdfs:label "Artifact Ontology"^^xsd:string ;
21-
owl:versionInfo "April 4, 2019"^^xsd:string ,
19+
owl:versionInfo "May 2, 2019"^^xsd:string ,
2220
"Version 1.1.1"^^xsd:string .
2321

2422
#################################################################
@@ -5823,4 +5821,4 @@ cco:XRayTelescope rdf:type owl:Class ;
58235821
rdfs:label "X-ray Telescope"^^xsd:string .
58245822

58255823

5826-
### Generated by the OWL API (version 4.5.9.2019-02-01T07:24:44Z) https://github.com/owlcs/owlapi
5824+
### Generated by the OWL API (version 4.5.6) https://github.com/owlcs/owlapi

CurrencyUnitOntology.ttl

Lines changed: 6 additions & 7 deletions
Original file line numberDiff line numberDiff line change
@@ -1,24 +1,23 @@
11
@prefix : <http://www.ontologyrepository.com/CommonCoreOntologies/Mid/CurrencyUnitOntology/> .
2-
@prefix dc: <http://purl.org/dc/elements/1.1/> .
32
@prefix cco: <http://www.ontologyrepository.com/CommonCoreOntologies/> .
43
@prefix obo: <http://purl.obolibrary.org/obo/> .
54
@prefix owl: <http://www.w3.org/2002/07/owl#> .
65
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
76
@prefix xml: <http://www.w3.org/XML/1998/namespace> .
87
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
9-
@prefix foaf: <http://xmlns.com/foaf/0.1/> .
108
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
119
@base <http://www.ontologyrepository.com/CommonCoreOntologies/Mid/CurrencyUnitOntology> .
1210

1311
<http://www.ontologyrepository.com/CommonCoreOntologies/Mid/CurrencyUnitOntology> rdf:type owl:Ontology ;
12+
owl:versionIRI <http://www.ontologyrepository.com/CommonCoreOntologies/Mid/2019-05-02/CurrencyUnitOntology> ;
1413
owl:imports <http://www.ontologyrepository.com/CommonCoreOntologies/Mid/InformationEntityOntology> ;
15-
rdfs:comment "This ontology is designed to represent currencies that are issued and used by countries."^^xsd:string ;
1614
cco:code_license "The 3-Clause BSD License: https://opensource.org/licenses/BSD-3-Clause"^^xsd:string ;
1715
cco:content_license "The Creative Commons BY 3.0 License: https://creativecommons.org/licenses/by/3.0/"^^xsd:string ;
18-
owl:versionInfo "April 4, 2019"^^xsd:string ,
19-
"Version 1.1.1"^^xsd:string ;
2016
cco:copyright "COPYRIGHT © 2015-2019 CUBRC, Inc."^^xsd:string ;
21-
rdfs:label "Currency Unit Ontology"^^xsd:string .
17+
rdfs:comment "This ontology is designed to represent currencies that are issued and used by countries."^^xsd:string ;
18+
rdfs:label "Currency Unit Ontology"^^xsd:string ;
19+
owl:versionInfo "May 2, 2019"^^xsd:string ,
20+
"Version 1.1.1"^^xsd:string .
2221

2322
#################################################################
2423
# Classes
@@ -933,4 +932,4 @@ cco:ZambiaKwacha rdf:type owl:NamedIndividual ,
933932
rdfs:label "Zambia Kwacha"^^xsd:string .
934933

935934

936-
### Generated by the OWL API (version 4.2.8.20170104-2310) https://github.com/owlcs/owlapi
935+
### Generated by the OWL API (version 4.5.6) https://github.com/owlcs/owlapi

EventOntology.ttl

Lines changed: 3 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -1,23 +1,22 @@
11
@prefix : <http://www.ontologyrepository.com/CommonCoreOntologies/Mid/EventOntology/> .
2-
@prefix dc: <http://purl.org/dc/elements/1.1/> .
32
@prefix cco: <http://www.ontologyrepository.com/CommonCoreOntologies/> .
43
@prefix obo: <http://purl.obolibrary.org/obo/> .
54
@prefix owl: <http://www.w3.org/2002/07/owl#> .
65
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
76
@prefix xml: <http://www.w3.org/XML/1998/namespace> .
87
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
9-
@prefix foaf: <http://xmlns.com/foaf/0.1/> .
108
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
119
@base <http://www.ontologyrepository.com/CommonCoreOntologies/Mid/EventOntology> .
1210

1311
<http://www.ontologyrepository.com/CommonCoreOntologies/Mid/EventOntology> rdf:type owl:Ontology ;
12+
owl:versionIRI <http://www.ontologyrepository.com/CommonCoreOntologies/Mid/2019-05-02/EventOntology> ;
1413
owl:imports <http://www.ontologyrepository.com/CommonCoreOntologies/Mid/InformationEntityOntology> ;
1514
cco:code_license "The 3-Clause BSD License: https://opensource.org/licenses/BSD-3-Clause"^^xsd:string ;
1615
cco:content_license "The Creative Commons BY 3.0 License: https://creativecommons.org/licenses/by/3.0/"^^xsd:string ;
1716
cco:copyright "COPYRIGHT © 2015-2019 CUBRC, Inc."^^xsd:string ;
1817
rdfs:comment "This ontology is designed to represent processual entities, especially those performed by agents, that occur within multiple domains."^^xsd:string ;
1918
rdfs:label "Event Ontology"^^xsd:string ;
20-
owl:versionInfo "April 4, 2019"^^xsd:string ,
19+
owl:versionInfo "May 2, 2019"^^xsd:string ,
2120
"Version 1.1.1"^^xsd:string .
2221

2322
#################################################################
@@ -3056,4 +3055,4 @@ cco:XrayFrequency rdf:type owl:Class ;
30563055
rdfs:label "X-ray Frequency"^^xsd:string .
30573056

30583057

3059-
### Generated by the OWL API (version 4.5.9.2019-02-01T07:24:44Z) https://github.com/owlcs/owlapi
3058+
### Generated by the OWL API (version 4.5.6) https://github.com/owlcs/owlapi

ExtendedRelationOntology.ttl

Lines changed: 7 additions & 20 deletions
Original file line numberDiff line numberDiff line change
@@ -1,25 +1,24 @@
11
@prefix : <http://www.ontologyrepository.com/CommonCoreOntologies/Mid/ExtendedRelationOntology/> .
2-
@prefix dc: <http://purl.org/dc/elements/1.1/> .
32
@prefix cco: <http://www.ontologyrepository.com/CommonCoreOntologies/> .
43
@prefix obo: <http://purl.obolibrary.org/obo/> .
54
@prefix owl: <http://www.w3.org/2002/07/owl#> .
65
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
76
@prefix xml: <http://www.w3.org/XML/1998/namespace> .
87
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
9-
@prefix foaf: <http://xmlns.com/foaf/0.1/> .
108
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
119
@base <http://www.ontologyrepository.com/CommonCoreOntologies/Mid/ExtendedRelationOntology> .
1210

1311
<http://www.ontologyrepository.com/CommonCoreOntologies/Mid/ExtendedRelationOntology> rdf:type owl:Ontology ;
12+
owl:versionIRI <http://www.ontologyrepository.com/CommonCoreOntologies/Mid/2019-05-02/ExtendedRelationOntology> ;
1413
owl:imports obo:bfo.owl ,
15-
cco:cco-ro-import.owl ;
14+
<http://www.ontologyrepository.com/CommonCoreOntologies/Upper/ROImport> ;
1615
cco:code_license "The 3-Clause BSD License: https://opensource.org/licenses/BSD-3-Clause"^^xsd:string ;
1716
cco:content_license "The Creative Commons BY 3.0 License: https://creativecommons.org/licenses/by/3.0/"^^xsd:string ;
1817
cco:copyright "COPYRIGHT © 2015-2019 CUBRC, Inc."^^xsd:string ;
1918
rdfs:comment "This ontology is designed to represent many of the relations (i.e. object properties) that hold between entities at the level of the mid-level Common Core Ontologies."^^xsd:string ;
2019
rdfs:label "Extended Relation Ontology"^^xsd:string ;
21-
owl:versionInfo "April 4, 2019"^^xsd:string ,
22-
"Version 1.1.1"^^xsd:string .
20+
owl:versionInfo "May 2, 2019"^^xsd:string ,
21+
"Version 1.1.1"^^xsd:string .
2322

2423
#################################################################
2524
# Annotation properties
@@ -394,13 +393,6 @@ cco:has_process_part rdf:type owl:ObjectProperty ;
394393
rdfs:label "has process part"^^xsd:string .
395394

396395

397-
### http://www.ontologyrepository.com/CommonCoreOntologies/has_proper_part
398-
cco:has_proper_part rdf:type owl:ObjectProperty ;
399-
cco:definition "TO DO"^^xsd:string ;
400-
cco:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/ExtendedRelationOntology"^^xsd:string ;
401-
rdfs:label "has proper part"^^xsd:string .
402-
403-
404396
### http://www.ontologyrepository.com/CommonCoreOntologies/inheres_in_aggregate
405397
cco:inheres_in_aggregate rdf:type owl:ObjectProperty ;
406398
rdfs:domain [ rdf:type owl:Class ;
@@ -503,6 +495,7 @@ cco:is_predecessor_of rdf:type owl:ObjectProperty ;
503495

504496
### http://www.ontologyrepository.com/CommonCoreOntologies/is_site_of
505497
cco:is_site_of rdf:type owl:ObjectProperty ;
498+
rdfs:subPropertyOf obo:BFO_0000067 ;
506499
owl:inverseOf cco:occurs_at ;
507500
rdfs:domain [ rdf:type owl:Class ;
508501
owl:unionOf ( obo:BFO_0000006
@@ -536,6 +529,7 @@ cco:is_temporal_region_of rdf:type owl:ObjectProperty ;
536529

537530
### http://www.ontologyrepository.com/CommonCoreOntologies/occurs_at
538531
cco:occurs_at rdf:type owl:ObjectProperty ;
532+
rdfs:subPropertyOf obo:BFO_0000066 ;
539533
rdfs:domain obo:BFO_0000015 ;
540534
rdfs:range [ rdf:type owl:Class ;
541535
owl:unionOf ( obo:BFO_0000006
@@ -556,13 +550,6 @@ cco:occurs_on rdf:type owl:ObjectProperty ;
556550
rdfs:label "occurs on"^^xsd:string .
557551

558552

559-
### http://www.ontologyrepository.com/CommonCoreOntologies/proper_part_of
560-
cco:proper_part_of rdf:type owl:ObjectProperty ;
561-
cco:definition "TO DO"^^xsd:string ;
562-
cco:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/ExtendedRelationOntology"^^xsd:string ;
563-
rdfs:label "proper part of"^^xsd:string .
564-
565-
566553
### http://www.ontologyrepository.com/CommonCoreOntologies/quality_of_aggregate
567554
cco:quality_of_aggregate rdf:type owl:ObjectProperty ;
568555
rdfs:subPropertyOf cco:inheres_in_aggregate ;
@@ -583,4 +570,4 @@ cco:role_of_aggregate rdf:type owl:ObjectProperty ;
583570
rdfs:label "role of aggregate"^^xsd:string .
584571

585572

586-
### Generated by the OWL API (version 4.5.9.2019-02-01T07:24:44Z) https://github.com/owlcs/owlapi
573+
### Generated by the OWL API (version 4.5.6) https://github.com/owlcs/owlapi

0 commit comments

Comments
 (0)