x0 to x1

gavryushkina · gavryushkina · commit 3eeb5abe3c6b · 2018-12-19T14:15:47.000+13:00
diff --git a/src/beast/evolution/speciation/SABirthDeathModel.java b/src/beast/evolution/speciation/SABirthDeathModel.java
@@ -388,7 +388,7 @@ public double calculateTreeLogLikelihood(TreeInterface tree)
 
         if (conditionOnSamplingInput.get()) {
             if (conditionOnRootInput.get()) {
-                logPost -= Math.log(lambda*oneMinusP0(x0, c1, c2)* oneMinusP0(x1, c1, c2));
+                logPost -= Math.log(lambda*oneMinusP0(x1, c1, c2)* oneMinusP0(x1, c1, c2));
             } else {
                 logPost -= Math.log(oneMinusP0(x0, c1, c2));
             }

Original file line number	Diff line number	Diff line change
`@@ -388,7 +388,7 @@ public double calculateTreeLogLikelihood(TreeInterface tree)`
`388`	`388`
`389`	`389`	`if (conditionOnSamplingInput.get()) {`
`390`	`390`	`if (conditionOnRootInput.get()) {`
`391`		`- logPost -= Math.log(lambdaoneMinusP0(x0, c1, c2) oneMinusP0(x1, c1, c2));`
	`391`	`+ logPost -= Math.log(lambdaoneMinusP0(x1, c1, c2) oneMinusP0(x1, c1, c2));`
`392`	`392`	`} else {`
`393`	`393`	`logPost -= Math.log(oneMinusP0(x0, c1, c2));`
`394`	`394`	`}`