You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Copy file name to clipboardExpand all lines: README.md
+7-4Lines changed: 7 additions & 4 deletions
Display the source diff
Display the rich diff
Original file line number
Diff line number
Diff line change
@@ -127,7 +127,7 @@ Tested with `python` version 3.6.13 and the following packages:
127
127
*[`karateclub`](https://pypi.org/project/numpy/): version 1.3.3
128
128
*[`stellargraph`](https://pypi.org/project/numpy/): version 1.2.1
129
129
130
-
The VF2 and ISMAGS algortihms are included in the [`Networkx` library](https://networkx.org/)
130
+
The VF2 [[C'04](#references)]and ISMAGS [[H'14](#references)] algorithms are included in the [`Networkx` library](https://networkx.org/)
131
131
132
132
Tested with `SPMF` version 2.54, which implements gSpan [[Y'02](#references)] (to mine frequent patterns) and cgSpan [[S'21](#references)] (closed frequent patterns).
133
133
@@ -140,10 +140,13 @@ For the ECML PKDD assessment, we use the following algorithms for the sake of co
140
140
141
141
142
142
# References
143
-
***[D'91]** A. S. Debnath, R. L. Lopez, G. Debnath, A. Shusterman, C. Hansch. *Structure-activity relationship of mutagenic aromatic and heteroaromatic nitro compounds. Correlation with molecular orbital energies and hydrophobicity*, Journal of Medicinal Chemistry 34(2), 786–797, 1991. DOI: [10.1021/jm00106a046](https://doi.org/10.1021/jm00106a046)
144
-
***[D'03]** P. D. Dobson, A. J. Doig. *Distinguishing enzyme structures from non-enzymes without alignments*, Journal of Molecular Biology 330(4), 771–783 ,2003. DOI: [10.1016/S0022-2836(03)00628-4](https://doi.org/10.1016/S0022-2836(03)00628-4)
143
+
***[D'91]** A. S. Debnath, R. L. Lopez, G. Debnath, A. Shusterman, C. Hansch. *Structure-activity relationship of mutagenic aromatic and heteroaromatic nitro compounds. Correlation with molecular orbital energies and hydrophobicity*, Journal of Medicinal Chemistry 34(2):786–797, 1991. DOI: [10.1021/jm00106a046](https://doi.org/10.1021/jm00106a046)
144
+
***[D'03]** P. D. Dobson, A. J. Doig. *Distinguishing enzyme structures from non-enzymes without alignments*, Journal of Molecular Biology 330(4):771–783, 2003. DOI: [10.1016/S0022-2836(03)00628-4](https://doi.org/10.1016/S0022-2836(03)00628-4)
145
+
***[H'14']** M. Houbraken, S. Demeyer, T. Michoel, P. Audenaert, D. Colle, M. Pickavet. *The Index-Based Subgraph Matching Algorithm with General Symmetries (ISMAGS): Exploiting Symmetry for Faster Subgraph Enumeration*, PLoS ONE 9(5):e97896, 2014. DOI: [10.1371/journal.pone.0097896](https://doi.org/10.1371/journal.pone.0097896).
145
146
***[P'22]** L. Potin, V. Labatut, R. Figueiredo, C. Largeron, P.-H. Morand. *FOPPA: A database of French Open Public Procurement Award notices*, Technical Report, Avignon University, 2022. [⟨hal-03796734⟩](https://hal.archives-ouvertes.fr/hal-03796734)
146
147
***[S'21]** Z. Shaul, S. Naaz. *cgSpan: Closed Graph-Based Substructure Pattern Mining, IEEE International Conference on Big Data, pp. 4989-4998, 2021. DOI: [10.1109/bigdata52589.2021.9671995](https://doi.org/10.1109/bigdata52589.2021.9671995)
147
-
***[T'03]** H. Toivonen, A. Srinivasan, R. D. King, S. Kramer, C. Helma. *Statistical evaluation of the predictive toxicology challenge 2000-2001*, Bioinformatics 19(10), 1183–1193, 2003. DOI: [10.1093/bioinformatics/btg130](https://doi.org/10.1093/bioinformatics/btg130)
148
+
***[T'03]** H. Toivonen, A. Srinivasan, R. D. King, S. Kramer, C. Helma. *Statistical evaluation of the predictive toxicology challenge 2000-2001*, Bioinformatics 19(10):1183–1193, 2003. DOI: [10.1093/bioinformatics/btg130](https://doi.org/10.1093/bioinformatics/btg130)
148
149
***[W'06]** N. Wale, G. Karypis. *Comparison of descriptor spaces for chemical compound retrieval and classification*, 6th International Conference on Data Mining, pp. 678–689, 2006. DOI: [10.1007/s10115-007-0103-5](https://doi.org/10.1007/s10115-007-0103-5)
149
150
***[Y'02]** X. Yan, J. Han. *gSpan: Graph-based substructure pattern mining*, IEEE International Conference on Data Mining, pp.721-724, 2002. DOI: [10.1109/ICDM.2002.1184038](https://doi.org/10.1109/ICDM.2002.1184038)
151
+
***[C'04]** L. P. Cordella, P. Foggia, C. Sansone, M. Vento. *A (sub)graph isomorphism algorithm for matching large graphs*, IEEE Transactions on Pattern Analysis and Machine Intelligence, 26(10):1367-1372, 2004. DOI: [10.1109/tpami.2004.75](https://doi.org/10.1109/tpami.2004.75)
0 commit comments