updated thermo library to version to 5.0.0.6

added extra log statement with the number of scans being processed

Author: nielshulstaert

Dockerfile

@@ -5,7 +5,7 @@ FROM mono:latest
 LABEL base_image="mono:latest"
 LABEL version="1"
 LABEL software="ThermoRawFileParser"
-LABEL software.version="1.1.4"
+LABEL software.version="1.1.7"
 LABEL about.summary="A software to convert Thermo RAW files to mgf and mzML"
 LABEL about.home="https://github.com/compomics/ThermoRawFileParser"
 LABEL about.documentation="https://github.com/compomics/ThermoRawFileParser"

Dockerfile_basic

@@ -5,7 +5,7 @@ FROM mono:latest
 LABEL base_image="mono:latest"
 LABEL version="1"
 LABEL software="ThermoRawFileParser"
-LABEL software.version="1.1.4"
+LABEL software.version="1.1.7"
 LABEL about.summary="A software to convert Thermo RAW files to mgf and mzML"
 LABEL about.home="https://github.com/compomics/ThermoRawFileParser"
 LABEL about.documentation="https://github.com/compomics/ThermoRawFileParser"

Writer/MgfSpectrumWriter.cs

@@ -29,6 +29,8 @@ public override void Write(IRawDataPlus rawFile, int firstScanNumber, int lastSc
             ConfigureWriter(".mgf");
             using (Writer)
             {
+                Log.Info("Processing " + (lastScanNumber - firstScanNumber) + " scans");
+
                 for (var scanNumber = firstScanNumber; scanNumber <= lastScanNumber; scanNumber++)
                 {
                     // Get each scan from the RAW file

Writer/MzMlSpectrumWriter.cs

@@ -92,6 +92,8 @@ public override void Write(IRawDataPlus rawFile, int firstScanNumber, int lastSc
 
             try
             {
+                Log.Info("Processing " + (lastScanNumber - firstScanNumber) + " scans");
+
                 _writer.WriteStartDocument();
 
                 if (_doIndexing)
@@ -943,7 +945,7 @@ private SpectrumType ConstructSpectrum(int scanNumber)
                 accession = "MS:1000285",
                 value = scan.ScanStatistics.TIC.ToString(CultureInfo.InvariantCulture),
                 cvRef = "MS"
-            });            
+            });
 
             double? basePeakMass = null;
             double? basePeakIntensity = null;