Astral model

caetera · caetera · commit 2b9e28f463ff · 2023-08-14T18:36:15.000+02:00
diff --git a/RawFileParser.cs b/RawFileParser.cs
@@ -138,6 +138,7 @@ private static void ProcessFile(ParseInput parseInput)
                 // selected instrument to the MS instrument, first instance of it
                 var firstScanNumber = -1;
                 var lastScanNumber = -1;
+
                 if (rawFile.GetInstrumentCountOfType(Device.MS) != 0)
                 {
                     rawFile.SelectInstrument(Device.MS, 1);
diff --git a/Writer/MzMlSpectrumWriter.cs b/Writer/MzMlSpectrumWriter.cs
@@ -240,7 +240,7 @@ public override void Write(IRawDataPlus rawFile, int firstScanNumber, int lastSc
                 _writer.WriteStartElement("referenceableParamGroup");
                 _writer.WriteAttributeString("id", "commonInstrumentParams");
 
-                var instrumentModel = OntologyMapping.getInstrumentModel(instrumentData.Name);
+                var instrumentModel = OntologyMapping.getInstrumentModel(instrumentData.Model);
                 SerializeCvParam(instrumentModel);
 
                 SerializeCvParam(new CVParamType

Original file line number	Diff line number	Diff line change
`@@ -138,6 +138,7 @@ private static void ProcessFile(ParseInput parseInput)`
`138`	`138`	`// selected instrument to the MS instrument, first instance of it`
`139`	`139`	`var firstScanNumber = -1;`
`140`	`140`	`var lastScanNumber = -1;`
	`141`	`+`
`141`	`142`	`if (rawFile.GetInstrumentCountOfType(Device.MS) != 0)`
`142`	`143`	`{`
`143`	`144`	`rawFile.SelectInstrument(Device.MS, 1);`