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README.md

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@@ -57,6 +57,9 @@ optional subcommands are xic|query (use [subcommand] -h for more info]):
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-b, --output_file=VALUE The output file. Specify this or an output
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directory -o. Specifying neither writes to the
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input directory.
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-s, --stdout Write to standard output. Cannot be combined with
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file or directory output. Implies silent logging,
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i.e. logging level 0
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-f, --format=VALUE The spectra output format: 0 for MGF, 1 for mzML,
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2 for indexed mzML, 3 for Parquet. Defaults to
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mzML if no format is specified.

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