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# ThermoRawFileParser
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Wrapper around the .net (C#) ThermoFisher ThermoRawFileReader library for running on Linux with mono (works on Windows too). It takes a thermo RAW file as input and outputs a metadata file and the spectra in 3 possible formats
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* MGF: only MS2 spectra
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* MGF: only MS2 and MS3 spectra
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* mzML and indexed mzML: both MS1 and MS2 spectra
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* Apache Parquet: under development
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