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Test dependecies
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4 files changed

+78
-9
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‎ThermoRawFileParserTest/ThermoRawFileParserTest.csproj‎

Lines changed: 20 additions & 6 deletions
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@@ -112,6 +112,12 @@
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<HintPath>..\packages\NUnit.3.13.1\lib\net45\nunit.framework.dll</HintPath>
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<Private>True</Private>
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</Reference>
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<Reference Include="OpenMcdf, Version=2.2.1.9, Culture=neutral, PublicKeyToken=fdbb1629d7c00800, processorArchitecture=MSIL">
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<HintPath>..\packages\OpenMcdf.2.2.1.9\lib\net40\OpenMcdf.dll</HintPath>
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</Reference>
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<Reference Include="OpenMcdf.Extensions, Version=2.3.0.0, Culture=neutral, PublicKeyToken=fdbb1629d7c00800, processorArchitecture=MSIL">
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<HintPath>..\packages\OpenMcdf.Extensions.2.2.1.4\lib\net40\OpenMcdf.Extensions.dll</HintPath>
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</Reference>
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<Reference Include="PepXML, Version=1.0.0.0, Culture=neutral, PublicKeyToken=null">
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<HintPath>..\packages\mzLib.1.0.450\lib\net471\PepXML.dll</HintPath>
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<Private>True</Private>
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<Reference Include="System.Configuration" />
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<Reference Include="System.Core" />
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<Reference Include="System.Data" />
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<Reference Include="System.IO.FileSystem.AccessControl, Version=5.0.0.0, Culture=neutral, PublicKeyToken=b03f5f7f11d50a3a, processorArchitecture=MSIL">
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<HintPath>..\packages\System.IO.FileSystem.AccessControl.5.0.0\lib\net461\System.IO.FileSystem.AccessControl.dll</HintPath>
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</Reference>
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<Reference Include="System.Net" />
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<Reference Include="System.Numerics" />
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<Reference Include="System.Runtime.Serialization" />
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<Reference Include="System.Security.AccessControl, Version=5.0.0.0, Culture=neutral, PublicKeyToken=b03f5f7f11d50a3a, processorArchitecture=MSIL">
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<HintPath>..\packages\System.Security.AccessControl.5.0.0\lib\net461\System.Security.AccessControl.dll</HintPath>
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</Reference>
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<Reference Include="System.Security.Principal.Windows, Version=5.0.0.0, Culture=neutral, PublicKeyToken=b03f5f7f11d50a3a, processorArchitecture=MSIL">
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<HintPath>..\packages\System.Security.Principal.Windows.5.0.0\lib\net461\System.Security.Principal.Windows.dll</HintPath>
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</Reference>
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<Reference Include="System.Web" />
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<Reference Include="System.Xml" />
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<Reference Include="System.Xml.Linq" />
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<Reference Include="ThermoFisher.CommonCore.BackgroundSubtraction, Version=1.0.0.0, Culture=neutral, PublicKeyToken=1aef06afb5abd953">
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<HintPath>..\packages\mzLib.1.0.450\lib\net471\ThermoFisher.CommonCore.BackgroundSubtraction.dll</HintPath>
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<Private>True</Private>
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</Reference>
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<Reference Include="ThermoFisher.CommonCore.Data, Version=1.0.0.0, Culture=neutral, PublicKeyToken=1aef06afb5abd953">
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<HintPath>..\packages\mzLib.1.0.450\lib\net471\ThermoFisher.CommonCore.Data.dll</HintPath>
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<Private>True</Private>
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<Reference Include="ThermoFisher.CommonCore.Data, Version=5.0.0.71, Culture=neutral, PublicKeyToken=1aef06afb5abd953, processorArchitecture=MSIL">
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<HintPath>..\packages\ThermoFisher.CommonCore.Data.5.0.0.71\lib\netstandard2.0\ThermoFisher.CommonCore.Data.dll</HintPath>
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</Reference>
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<Reference Include="ThermoFisher.CommonCore.MassPrecisionEstimator, Version=1.0.0.0, Culture=neutral, PublicKeyToken=null">
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<HintPath>..\packages\mzLib.1.0.450\lib\net471\ThermoFisher.CommonCore.MassPrecisionEstimator.dll</HintPath>
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<Private>True</Private>
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</Reference>
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<Reference Include="ThermoFisher.CommonCore.RawFileReader, Version=1.0.0.0, Culture=neutral, PublicKeyToken=1aef06afb5abd953">
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<HintPath>..\packages\mzLib.1.0.450\lib\net471\ThermoFisher.CommonCore.RawFileReader.dll</HintPath>
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<Private>True</Private>
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<Reference Include="ThermoFisher.CommonCore.RawFileReader, Version=5.0.0.71, Culture=neutral, PublicKeyToken=1aef06afb5abd953, processorArchitecture=MSIL">
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<HintPath>..\packages\ThermoFisher.CommonCore.RawFileReader.5.0.0.71\lib\netstandard2.0\ThermoFisher.CommonCore.RawFileReader.dll</HintPath>
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</Reference>
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<Reference Include="ThermoRawFileReader, Version=1.0.0.0, Culture=neutral, PublicKeyToken=null">
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<HintPath>..\packages\mzLib.1.0.450\lib\net471\ThermoRawFileReader.dll</HintPath>
@@ -171,6 +184,7 @@
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<Compile Include="XicReaderTests.cs" />
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</ItemGroup>
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<ItemGroup>
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<None Include="app.config" />
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<None Include="Data\TestFolderMgfs\small1.RAW">
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<CopyToOutputDirectory>PreserveNewest</CopyToOutputDirectory>
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</None>

‎ThermoRawFileParserTest/app.config‎

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<?xml version="1.0" encoding="utf-8"?>
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<configuration>
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<runtime>
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<assemblyBinding xmlns="urn:schemas-microsoft-com:asm.v1">
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<dependentAssembly>
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<assemblyIdentity name="System.ValueTuple" publicKeyToken="cc7b13ffcd2ddd51" culture="neutral" />
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<bindingRedirect oldVersion="0.0.0.0-4.0.3.0" newVersion="4.0.3.0" />
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</dependentAssembly>
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<dependentAssembly>
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<assemblyIdentity name="Newtonsoft.Json" publicKeyToken="30ad4fe6b2a6aeed" culture="neutral" />
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<bindingRedirect oldVersion="0.0.0.0-13.0.0.0" newVersion="13.0.0.0" />
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</dependentAssembly>
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<dependentAssembly>
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<assemblyIdentity name="ThermoFisher.CommonCore.RawFileReader" publicKeyToken="1aef06afb5abd953" culture="neutral" />
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<bindingRedirect oldVersion="0.0.0.0-5.0.0.71" newVersion="5.0.0.71" />
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</dependentAssembly>
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<dependentAssembly>
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<assemblyIdentity name="System.Buffers" publicKeyToken="cc7b13ffcd2ddd51" culture="neutral" />
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<bindingRedirect oldVersion="0.0.0.0-4.0.3.0" newVersion="4.0.3.0" />
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</dependentAssembly>
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<dependentAssembly>
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<assemblyIdentity name="OpenMcdf" publicKeyToken="fdbb1629d7c00800" culture="neutral" />
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<bindingRedirect oldVersion="0.0.0.0-2.2.1.9" newVersion="2.2.1.9" />
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</dependentAssembly>
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<dependentAssembly>
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<assemblyIdentity name="System.Runtime.CompilerServices.Unsafe" publicKeyToken="b03f5f7f11d50a3a" culture="neutral" />
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<bindingRedirect oldVersion="0.0.0.0-5.0.0.0" newVersion="5.0.0.0" />
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</dependentAssembly>
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<dependentAssembly>
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<assemblyIdentity name="ThermoFisher.CommonCore.Data" publicKeyToken="1aef06afb5abd953" culture="neutral" />
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<bindingRedirect oldVersion="0.0.0.0-5.0.0.71" newVersion="5.0.0.71" />
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</dependentAssembly>
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<dependentAssembly>
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<assemblyIdentity name="System.IO.FileSystem.AccessControl" publicKeyToken="b03f5f7f11d50a3a" culture="neutral" />
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<bindingRedirect oldVersion="0.0.0.0-5.0.0.0" newVersion="5.0.0.0" />
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</dependentAssembly>
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<dependentAssembly>
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<assemblyIdentity name="OpenMcdf.Extensions" publicKeyToken="fdbb1629d7c00800" culture="neutral" />
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<bindingRedirect oldVersion="0.0.0.0-2.3.0.0" newVersion="2.3.0.0" />
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</dependentAssembly>
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<dependentAssembly>
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<assemblyIdentity name="System.Security.Principal.Windows" publicKeyToken="b03f5f7f11d50a3a" culture="neutral" />
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<bindingRedirect oldVersion="0.0.0.0-5.0.0.0" newVersion="5.0.0.0" />
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</dependentAssembly>
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<dependentAssembly>
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<assemblyIdentity name="System.Security.AccessControl" publicKeyToken="b03f5f7f11d50a3a" culture="neutral" />
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<bindingRedirect oldVersion="0.0.0.0-5.0.0.0" newVersion="5.0.0.0" />
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</dependentAssembly>
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</assemblyBinding>
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</runtime>
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</configuration>

‎ThermoRawFileParserTest/packages.config‎

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@@ -12,8 +12,13 @@
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<package id="Newtonsoft.Json" version="13.0.1" targetFramework="net472" />
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<package id="NJsonSchema" version="10.4.0" targetFramework="net472" />
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<package id="NUnit" version="3.13.1" targetFramework="net472" />
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<package id="OpenMcdf" version="2.2.1.9" targetFramework="net472" />
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<package id="OpenMcdf.Extensions" version="2.2.1.4" targetFramework="net472" />
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<package id="PSI_Interface" version="2.3.2" targetFramework="net472" />
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<package id="zlib.net" version="1.0.4.0" targetFramework="net471" />
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<package id="System.IO.FileSystem.AccessControl" version="5.0.0" targetFramework="net472" />
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<package id="System.Security.AccessControl" version="5.0.0" targetFramework="net472" />
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<package id="System.Security.Principal.Windows" version="5.0.0" targetFramework="net472" />
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<package id="ThermoFisher.CommonCore.Data" version="5.0.0.71" targetFramework="net472" />
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<package id="ThermoFisher.CommonCore.RawFileReader" version="5.0.0.71" targetFramework="net472" />
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</packages>
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<package id="zlib.net" version="1.0.4.0" targetFramework="net471" />
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</packages>

‎Util/Peptide.cs‎

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using System.Collections.Generic;
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using System.Linq;
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using System.Text.RegularExpressions;
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using System.Threading.Tasks;
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namespace ThermoRawFileParser.Util
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{

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