Ignore not-Raw-files during folder processing

Author: caetera

RawFileParser.cs

@@ -1,5 +1,6 @@
 using System;
 using System.IO;
+using System.Linq;
 using ThermoFisher.CommonCore.Data;
 using ThermoFisher.CommonCore.Data.Business;
 using ThermoFisher.CommonCore.Data.Interfaces;
@@ -23,9 +24,10 @@ public static void Parse(ParseInput parseInput)
             {
                 Log.Info("Started analyzing folder " + parseInput.RawDirectoryPath);
 
-                var rawFilesPath =
-                    Directory.EnumerateFiles(parseInput.RawDirectoryPath);
-                if (Directory.GetFiles(parseInput.RawDirectoryPath, "*", SearchOption.TopDirectoryOnly).Length == 0)
+                var rawFilesPath = Directory.EnumerateFiles(parseInput.RawDirectoryPath, "*", SearchOption.TopDirectoryOnly).Where(s => s.ToLower().EndsWith("raw")).ToArray();
+                Log.Info(String.Format("The folder contains {0} RAW files", rawFilesPath.Length));
+
+                if (rawFilesPath.Length == 0)
                 {
                     Log.Debug("No raw files found in folder");
                     throw new RawFileParserException("No raw files found in folder!");

ThermoRawFileParser.csproj

@@ -56,6 +56,9 @@
     <CodeAnalysisRuleSet>MinimumRecommendedRules.ruleset</CodeAnalysisRuleSet>
     <Prefer32Bit>false</Prefer32Bit>
   </PropertyGroup>
+  <PropertyGroup>
+    <StartupObject>ThermoRawFileParser.MainClass</StartupObject>
+  </PropertyGroup>
   <ItemGroup>
     <Reference Include="AWS.Logger.Core, Version=1.4.0.0, Culture=neutral, PublicKeyToken=885c28607f98e604">
       <HintPath>packages\AWS.Logger.Core.1.4.0\lib\net45\AWS.Logger.Core.dll</HintPath>

ThermoRawFileParserTest/Data/TestFolderMgfs/NOTRAWFILE

@@ -0,0 +1 @@
+NOTRAWFILE

ThermoRawFileParserTest/WriterTests.cs

@@ -35,18 +35,25 @@ public void TestMgf()
         public void TestFolderMgfs()
         {
             // Get temp path for writing the test MGF
-            var tempFilePath = Path.GetTempPath();
+            var tempFilePath = Path.Combine(Path.GetTempPath(), Path.GetRandomFileName());
+
+            Directory.CreateDirectory(tempFilePath);
 
             var testRawFolder = Path.Combine(AppDomain.CurrentDomain.BaseDirectory, @"Data/TestFolderMgfs");
             var parseInput = new ParseInput(null, testRawFolder, tempFilePath, OutputFormat.MGF);
 
             RawFileParser.Parse(parseInput);
 
+            var numfiles = Directory.GetFiles(tempFilePath, "*.mgf");
+            Assert.AreEqual(numfiles.Length, 2);
+
             var mgfData = Mgf.LoadAllStaticData(Path.Combine(tempFilePath, "small1.mgf"));
             Assert.AreEqual(34, mgfData.NumSpectra);
 
             var mgfData2 = Mgf.LoadAllStaticData(Path.Combine(tempFilePath, "small2.mgf"));
             Assert.AreEqual(34, mgfData2.NumSpectra);
+
+            Directory.Delete(tempFilePath, true);
         }
 
         [Test]