Test pinned dependencies for pyinstaller through dependency group

Author: RalfG

.github/workflows/test.yml

@@ -45,21 +45,18 @@ jobs:
         run: uv run ms2rescore --help
 
   test-windows-installer:
-    # Only run on push to main (e.g., after PR merge)
-    if: ${{ github.ref == 'refs/heads/main' }}
     runs-on: windows-latest
     steps:
       - uses: actions/checkout@v4
 
-      - uses: actions/setup-python@v5
+      - name: Install uv
+        uses: astral-sh/setup-uv@v6
         with:
-          python-version: "3.12"
+          python-version: "3.11"
+          enable-cache: true
 
       - name: Install package and dependencies
-        run: |
-          # Using pip to ensure proper environment discovery by PyInstaller
-          python -m pip install --upgrade pip
-          pip install --only-binary :all: .[ionmob,idxml] pyinstaller
+        run: uv pip install --group installer .
 
       - name: Install Inno Setup
         uses: crazy-max/ghaction-chocolatey@v1

pyproject.toml

@@ -19,6 +19,7 @@ authors = [
     { name = "Ralf Gabriels", email = "[email protected]" },
     { name = "Arthur Declercq", email = "[email protected]" },
     { name = "Ana Sílvia C. Silva" },
+    { name = "Robbe Devreese" },
     { name = "Robbin Bouwmeester" },
     { name = "Louise Buur" },
 ]
@@ -37,12 +38,12 @@ dependencies = [
     "customtkinter>=5,<6",
     "deeplc>=3.1",
     "deeplcretrainer",
-    "im2deep==1.1.1",
+    "im2deep>=1.1",
     "jinja2>=3",
     "lxml>=4.5",
     "mokapot==0.10",                     # 0.11.0 will introduce API changes
     "ms2pip>=4.0.0",
-    "ms2rescore_rs>=0.4.3",
+    "ms2rescore_rs>=0.4",
     "numpy>=1.25",
     "packaging>=25.0",
     "pandas>=1",
@@ -71,6 +72,14 @@ docs = [
     "sphinx-autobuild",
     "toml",
 ]
+installer = [
+    # Pinned dependencies for reproducible Windows installer builds
+    "pyinstaller",
+    "pyopenms==3.3",
+    "ionmob>=0.2",
+    "tensorflow",
+    "im2deep==1.1.1",
+]
 
 [project.urls]
 GitHub = "https://github.com/compomics/ms2rescore"