Any specific settings for immunopeptidome data?

[JingAnyaSun]

Dear developers,

Thanks for creating the tool. I was trying to use it for FDR rescoring for immunopeptidome data. However, I encountered some difficulties to run it through. The input files I used were pepXML file from MSFragger and mzML files. I have also enclosed my config file below. Do you have any suggestions for me? Thanks in advance.

config.json

Best,
Jing

[RalfG]

Dear @JingAnyaSun,

Apologies for the late reply. Were you able to fix the issue? If not, and still relevant, could you share more details on the issue, such as error messages or logs?

Best,
Ralf