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1 parent 224f401 commit 1d63d25Copy full SHA for 1d63d25
psm_utils/io/sage.py
@@ -70,6 +70,7 @@ def _get_peptide_spectrum_match(self, psm_dict) -> PSM:
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score=float(psm_dict[self.score_column]),
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precursor_mz=self._parse_precursor_mz(psm_dict["expmass"], psm_dict["charge"]),
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retention_time=float(psm_dict["rt"]),
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+ ion_mobility=float(psm_dict["ion_mobility"]),
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protein_list=psm_dict["proteins"].split(";"),
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source="sage",
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rank=int(float(psm_dict["rank"])),
@@ -143,6 +144,7 @@ def __iter__(self) -> Iterable[PSM]:
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"delta_rt_model",
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"aligned_rt",
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"predicted_rt",
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+ "predicted_mobility",
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"matched_peaks",
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"longest_b",
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"longest_y",
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