Merge pull request #111 from compomics/fix/pepxml-issue-108

RalfG · web-flow · commit 22c7b89e9011 · 2025-01-20T10:32:24.000+01:00
Fix potential downstream issues because pepxml-read PSM had `rescoring_features=None`
diff --git a/psm_utils/io/pepxml.py b/psm_utils/io/pepxml.py
@@ -153,5 +153,5 @@ def _parse_psm(self, spectrum_query: dict, search_hit: dict) -> PSM:
                     for key in search_hit["search_score"]
                 }
             ),
-            rescoring_features=None,
+            rescoring_features=dict(),
         )

Original file line number	Diff line number	Diff line change
`@@ -153,5 +153,5 @@ def _parse_psm(self, spectrum_query: dict, search_hit: dict) -> PSM:`
`153`	`153`	`for key in search_hit["search_score"]`
`154`	`154`	`}`
`155`	`155`	`),`
`156`		`- rescoring_features=None,`
	`156`	`+ rescoring_features=dict(),`
`157`	`157`	`)`