Fix bug in PercolatorTabWriter where style parameter was not propagated (fixes #114)

RalfG · RalfG · commit e4aa4bce709b · 2025-03-06T15:39:24.000+01:00
diff --git a/psm_utils/io/percolator.py b/psm_utils/io/percolator.py
@@ -246,6 +246,8 @@ def __init__(
                     f"Could not infer Percolator Tab style from file extension `{suffix}`. "
                     "Please provide the `style` parameter."
                 )
+        else:
+            self.style = style
 
         if self.style == "pin":
             basic_features = ["PSMScore", "ChargeN"] if add_basic_features else []

Original file line number	Diff line number	Diff line change
`@@ -246,6 +246,8 @@ def __init__(`
`246`	`246`	f"Could not infer Percolator Tab style from file extension `{suffix}`. "
`247`	`247`	"Please provide the `style` parameter."
`248`	`248`	`)`
	`249`	`+ else:`
	`250`	`+ self.style = style`
`249`	`251`
`250`	`252`	`if self.style == "pin":`
`251`	`253`	`basic_features = ["PSMScore", "ChargeN"] if add_basic_features else []`