Fix GitHub Actions and tests after reorganization

- Update .github/workflows/tests.yml to use code/generate_figures.py
- Update tests/test_cli.py to look for generate_figures.py in code/ folder
- Fixes CI/CD pipeline after moving Python scripts to code/ directory

Author: jeremymanning

.github/workflows/tests.yml

@@ -63,11 +63,11 @@ jobs:
 
     - name: Test figure generation (single)
       run: |
-        python generate_figures.py --figure 1a --data tests/data/test_model_results.pkl --output tests/output_single
+        python code/generate_figures.py --figure 1a --data tests/data/test_model_results.pkl --output tests/output_single
 
     - name: Test figure generation (all)
       run: |
-        python generate_figures.py --data tests/data/test_model_results.pkl --output tests/output_all
+        python code/generate_figures.py --data tests/data/test_model_results.pkl --output tests/output_all
       timeout-minutes: 5
 
     - name: Upload test artifacts

data/model_results.pkl

@@ -17,7 +17,7 @@ class TestCLI:
     @classmethod
     def setup_class(cls):
         """Set up test paths."""
-        cls.script_path = Path(__file__).parent.parent / "generate_figures.py"
+        cls.script_path = Path(__file__).parent.parent / "code" / "generate_figures.py"
         cls.test_data_path = Path(__file__).parent / "data" / "test_model_results.pkl"
         cls.temp_dir = tempfile.mkdtemp()