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- __archive__
- a
- ABINIT
- ABRicate
- ANIcalculator
- ANTLR
- ANTs
- AOCC
- APR-util
- APR
- ASAP
- ASE
- ATK
- AUGUSTUS
- AUTO-07p
- AdapterRemoval
- Albumentations
- AlphaFold
- AmberTools
- Anaconda3
- Arb
- Archive-Zip
- Armadillo
- Arriba
- Arrow
- ArviZ
- Aspera-CLI
- AutoDock-GPU
- AutoDock-Vina
- AutoDock
- Autoconf
- Automake
- Autotools
- ack
- aiohttp
- alevin-fry
- anndata
- ant
- any2fasta
- archspec
- argtable
- aria2
- arosics
- arpack-ng
- arrow-R
- astropy
- at-spi2-atk
- at-spi2-core
- atools
- attr
- b
- BAGEL
- BBMap
- BCFtools
- BEDTools
- BGC-Bayesian-genomic-clines
- BLAST+
- BLAST
- BLAT
- BLIS
- BMTK
- BUSCO
- BWA
- BamTools
- Bazel
- Beast
- BeautifulSoup
- BerkeleyGW
- BgeeCall
- BgeeDB
- Bio-SearchIO-hmmer
- BioPerl
- Biopython
- Bison
- Blosc2
- Blosc
- Bonnie++
- Boost.MPI
- Boost.Python
- Boost
- Bowtie2
- Bowtie
- Bracken
- Braindecode
- Brotli-python
- Brotli
- Brunsli
- babl
- bamtofastq
- bashplotlib
- batchgenerators
- bbFTP
- bcbio-gff
- bcl2fastq2
- beagle-lib
- binutils
- bioawk
- biogeme
- bokeh
- boost_histogram
- boto3
- bpp
- bpytop
- buildenv
- bx-python
- bzip2
- c
- CAT-BAT
- CCL
- CD-HIT
- CDO
- CFITSIO
- CGAL
- CLEASE
- CMake
- COBRApy
- COMSOL
- CP2K
- CREST
- CUDA-Samples
- CUDAcore
- CVXOPT
- CWIPI
- CalculiX-CrunchiX
- CapnProto
- Cartopy
- Cbc
- CellBender
- CellRanger-ATAC
- CellRanger
- CellRank
- Centrifuge
- Cgl
- CharLS
- CheckM
- Check
- Clang
- Clp
- Clustal-Omega
- ClustalW2
- Cogent
- CoinUtils
- Coin
- ConnectomeWorkbench
- CoordgenLibs
- CppUnit
- CubeGUI
- CubeLib
- CubeWriter
- c-ares
- cDNA_Cupcake
- cURL
- cairo
- canu
- code-server
- colossalai
- configurable-http-proxy
- coverage
- cppy
- crb-blast
- cryoCARE
- cryoDRGN
- ctffind
- cuDNN
- cutadapt
- cwltool
- d
- DAS_Tool
- DB_File
- DBus
- DB
- DCMTK
- DFT-D3
- DFTB+
- DGL
- DIAMOND
- DIRAC
- DLPack
- DMLC-Core
- DaliLite
- Dalton
- DeepLabCut
- DeepMod2
- DendroPy
- Deprecated
- Detectron2
- DistributedStream
- Doxygen
- Dsuite
- dRep
- dask
- dbus-glib
- dcm2niix
- deal.II
- deepTools
- deepmedic
- dftd3-lib
- dialog
- dill
- dlib
- dm-haiku
- dm-tree
- double-conversion
- e
- EDirect
- EIGENSOFT
- ELPA
- ELSI-RCI
- ELSI
- EMBOSS
- ESM-2
- ESMF
- ESPResSo
- ETE
- EasyBuild
- Eigen
- Elk
- ExaML
- Exonerate
- Extrae
- eQuilibrator
- ecCodes
- edlib
- eht-imaging
- einops
- elbencho
- elfutils
- enaBrowserTool
- epiScanpy
- exiv2
- expat
- expecttest
- f
- FACE
- FASTX-Toolkit
- FFTW
- FFmpeg
- FLAC
- FLINT
- FLTK
- FMPy
- FORD
- FSL
- FastANI
- FastFold
- FastTree
- Fastaq
- Filtlong
- Fiona
- Flask
- FlexiBLAS
- Flye
- FoBiS
- FragGeneScan
- FreeImage
- FreeTDS
- FriBidi
- f90wrap
- fastahack
- fastparquet
- fastp
- fastq-tools
- fdict
- fermi-lite
- filevercmp
- file
- fio
- flair-NLP
- flatbuffers-python
- flatbuffers
- flex
- flook
- fontconfig
- forbear
- foss
- freebayes
- freeglut
- freetype
- freud-analysis
- fsom
- fumi_tools
- futile
- g
- GATK
- GCCcore
- GCC
- GConf
- GDAL
- GDB
- GDRCopy
- GD
- GEGL
- GEOS
- GHC
- GIMP
- GL2PS
- GLFW
- GLIMPSE
- GLM
- GLPK
- GLibmm
- GLib
- GMAP-GSNAP
- GMP
- GObject-Introspection
- GPAW
- GPyTorch
- GROMACS
- GSL
- GST-plugins-base
- GStreamer
- GTDB-Tk
- GTK+
- GTK2
- GTK3
- GTS
- Gaussian
- Gdk-Pixbuf
- Geant4-data
- GenomeTools
- GffCompare
- Ghostscript
- Gibbs2
- GitPython
- GlobalArrays
- Globus-CLI
- GnuTLS
- Go
- Grace
- Graphviz
- Guile
- Gurobi
- g2clib
- g2lib
- gappa
- gawk
- gc
- gengetopt
- gensim
- geopandas
- georges
- gettext
- gexiv2
- gffread
- gflags
- gh
- giflib
- git
- glew
- glib-networking
- gmpy2
- gmsh
- gnuplot
- gobff
- gomkl
- gompi
- googletest
- gperftools
- gperf
- gpustat
- graphite2
- groff
- gzip
- h
- HD-BET
- HDBSCAN
- HDF5
- HDF
- HH-suite
- HISAT2
- HMMER2
- HMMER
- HPCG
- HPL
- HTSlib
- HarfBuzz
- HighFive
- Highway
- Horovod
- HyPhy
- Hydra
- Hyperopt
- Hypre
- h5py
- help2man
- hifiasm
- histolab
- hivtrace
- hwloc
- hypothesis
- i
- ICU
- IDBA-UD
- IOR
- IPython
- IQ-TREE
- IRkernel
- ISA-L
- ISL
- ITK
- ITSx
- IgBLAST
- ImageMagick
- InChI
- InParanoid
- Infernal
- InterOp
- InterProScan_data
- InterProScan
- igraph
- iimpi
- imagecodecs
- imageio
- imake
- imgaug
- imkl
- impi
- inferCNV
- intel-compilers
- intel
- intervaltree-python
- intervaltree
- intltool
- iomkl
- iompi
- itac
- j
- JAGS
- JSON-GLib
- JasPer
- Java
- Jellyfish
- JsonCpp
- Judy
- Julia
- JupyterHub
- JupyterLab
- jax
- jbigkit
- jemalloc
- json-c
- json-fortran
- jupyter-matlab-proxy
- jupyter-resource-usage
- jupyter-server-proxy
- jxrlib
- k
- Kaleido
- Kalign
- Kent_tools
- Kraken2
- Kraken
- KronaTools
- kallisto
- kim-api
- l
- LAME
- LAMMPS
- LDC
- LERC
- LIBSVM
- LLVM
- LMDB
- LMfit
- LS-PrePost
- LSD2
- LZO
- Leptonica
- LibLZF
- LibSoup
- LibTIFF
- Libint
- LittleCMS
- Lua
- lavaan
- leidenalg
- libFLAME
- libGLU
- libGridXC
- libPSML
- libQGLViewer
- libRmath
- libSBML
- libaec
- libaed2
- libaio
- libarchive
- libavif
- libcerf
- libcint
- libconfig
- libdap
- libde265
- libdeflate
- libdrm
- libdwarf
- libedit
- libelf
- libepoxy
- libevent
- libfabric
- libfdf
- libffi
- libgcrypt
- libgd
- libgeotiff
- libgit2
- libglvnd
- libgpg-error
- libharu
- libheif
- libiconv
- libidn2
- libidn
- libjpeg-turbo
- libjxl
- libmbd
- libmypaint
- libnsl
- libogg
- libpciaccess
- libpci
- libpng
- libpsl
- libpspio
- libreadline
- librsvg
- libsigc++
- libsndfile
- libsodium
- libtasn1
- libtirpc
- libtool
- libtree
- libunistring
- libunwind
- libvdwxc
- libvorbis
- libwebp
- libxc
- libxml++
- libxml2
- libxslt
- libxsmm
- libyaml
- libzip
- likwid
- lit
- longestrunsubsequence
- loompy
- lpsolve
- lxml
- lz4
- m
- M1QN3
- M4
- MACS2
- MAFFT
- MAGeCK
- MCL
- MDAnalysis
- MDTraj
- MEGAHIT
- MEME
- MEMOTE
- METIS
- MINPACK
- MMseqs2
- MNE-Python
- MOABB
- MONAI
- MPC
- MPFR
- MPICH
- MRtrix
- MUMPS
- MUMmer
- MUSCLE
- MUST
- MaSuRCA
- Mako
- MariaDB-connector-c
- MariaDB
- Mash
- Mathematica
- MaxBin
- Megalodon
- Mercurial
- Mesa-demos
- Mesa
- Meson
- MetaBAT
- MetaEuk
- MicrobeAnnotator
- Mini-XML
- Miniconda3
- Mmg
- MotionCor2
- MoviePy
- MultiQC
- maeparser
- magma
- makedepend
- makeinfo
- make
- mapDamage
- matplotlib
- mcu
- mdust
- medaka
- mimalloc
- miniasm
- minimap2
- mm-common
- molmod
- motif
- mpmath
- mrcfile
- muParser
- multichoose
- muparserx
- n
- NAMD
- NASM
- NBO
- NCCL
- NCL
- NCO
- NFFT
- NGLess
- NGS
- NLTK
- NLopt
- NSPR
- NSS
- NTPoly
- NVHPC
- NWChem
- NanoLyse
- NanoPlot
- NanoStat
- Nextflow
- NiBabel
- Nim
- Ninja
- Nipype
- n2v
- nanoflann
- nanoget
- nanomath
- ncbi-vdb
- ncdf4
- ncdu
- ncurses
- ncview
- neptune-client
- netCDF-C++4
- netCDF-Fortran
- netCDF
- netcdf4-python
- nettle
- networkx
- nf-core-mag
- nglview
- nlohmann_json
- nodejs
- nsync
- num2words
- numactl
- numba
- numexpr
- nvtop
- o
- ONNX-Runtime
- ONNX
- OPARI2
- ORCA
- OSU-Micro-Benchmarks
- OTF2
- OpenBLAS
- OpenBabel
- OpenCV
- OpenEXR
- OpenFOAM
- OpenFace
- OpenFold
- OpenJPEG
- OpenMM
- OpenMPI
- OpenMolcas
- OpenPGM
- OpenRefine
- OpenSSL
- OpenSceneGraph
- OpenSlide
- OptiX
- Optuna
- Osi
- occt
- ont-fast5-api
- ont-remora
- openCARP
- openpyxl
- openslide-python
- p
- PAL2NAL
- PAML
- PAPI
- PAUP
- PCRE2
- PCRE
- PDT
- PEAR
- PEPT
- PETSc
- PIPITS
- PLINK
- PLUMED
- PMIx
- PRANK
- PRISMS-PF
- PROJ
- PRSice
- PSM2
- PSolver
- Pandoc
- Panedr
- Pango
- ParMETIS
- ParaView
- Parallel-Hashmap
- Paraver
- Perl
- PhyloPhlAn
- Pillow-SIMD
- Pillow
- Pint
- PnetCDF
- Porechop
- PostgreSQL
- ProFit
- PuLP
- PyAMG
- PyCairo
- PyDamage
- PyImageJ
- PyOpenGL
- PyQt5
- PyQtGraph
- PySCF
- PyTables
- PyTorch-Geometric
- PyTorch-Ignite
- PyTorch-Lightning
- PyTorch
- PyYAML
- PyZMQ
- Pyomo
- Pysam
- Python
- p11-kit
- p4est
- p7zip
- pFUnit
- pagmo
- pairsnp
- paladin
- panaroo
- panito
- parallel
- parameterized
- parasail
- pastml
- patchelf
- pauvre
- petsc4py
- pftoolsV3
- phototonic
- picard
- pigz
- pixman
- pkg-config
- pkgconfig
- pkgconf
- plotly.py
- pocl
- poppler
- preseq
- pretty-yaml
- prodigal
- prokka
- protobuf-python
- protobuf
- pugixml
- pullseq
- pyBigWig
- pyWannier90
- pyXDF
- pybind11
- pycoQC
- pycocotools
- pydicom
- pydot
- pyfaidx
- pygmo
- pygraphviz
- pyproj
- pyradiomics
- pyro-ppl
- pyspoa
- pytest-xdist
- python-igraph
- python-irodsclient
- python-isal
- python-libsbml
- python-parasail
- q
- QCG-PilotJob
- QD
- QIIME2
- QUAST
- Qhull
- Qiskit
- Qt5
- Quandl
- QuantumESPRESSO
- Qwt
- r
- R-bundle-Bioconductor
- RAxML
- RDFlib
- RDKit
- RE2
- RMBlast
- RNA-SeQC
- RSeQC
- RStudio-Server
- Racon
- RapidJSON
- Raptor
- Ray-project
- ReFrame
- Redis
- RepeatMasker
- Rgurobi
- Roary
- Ruby
- Rust
- R
- radeontop
- re2c
- redis-py
- retworkx
- rgdal
- rgeos
- rising
- rjags
- rmarkdown
- rpy2
- ruamel.yaml
- s
- SAMtools
- SBCL
- SCENIC
- SCOTCH
- SCons
- SDL2
- SEACells
- SEPP
- SHAPEIT4
- SIONlib
- SLEPc
- SOCI
- SPAdes
- SPOOLES
- SQLite
- SRA-Toolkit
- SSW
- STAR
- SWIG
- SWIPE
- Sambamba
- ScaFaCoS
- ScaLAPACK
- Scalasca
- Schrodinger
- SciPy-bundle
- Scoary
- Score-P
- Seaborn
- SentencePiece
- SeqKit
- SeqLib
- Serf
- Seurat
- Shapely
- ShengBTE
- Siesta
- SignalP
- SimpleITK
- Simstrat
- SoQt
- SpaceRanger
- Stack
- StringTie
- Subread
- Subversion
- SuiteSparse
- SuperLU
- SyRI
- SymEngine-python
- SymEngine
- Szip
- samblaster
- scArches
- scCODA
- scGeneFit
- scVelo
- scanpy
- scib-metrics
- scib
- scikit-allel
- scikit-bio
- scikit-build
- scikit-image
- scikit-learn
- scikit-misc
- scikit-optimize
- scvi-tools
- segemehl
- seqtk
- sfftk
- sinto
- skorch
- slepc4py
- smithwaterman
- smooth-topk
- snakemake
- snappy
- snp-sites
- spatialreg
- spdlog
- spglib-python
- spglib
- spoa
- statsmodels
- stripy
- subset-bam
- sympy
- t
- TALYS
- TAMkin
- TCLAP
- TN93
- TRAVIS-Analyzer
- TRF
- Tcl
- TensorFlow-Datasets
- TensorFlow
- ThemisPy
- Tkinter
- Tk
- Transformers
- TreeMix
- Trim_Galore
- Trycycler
- tabixpp
- tabix
- tbb
- tcsh
- tensorboard
- tensorflow-probability
- tesseract
- texlive
- time
- tmux
- toil
- tokenizers
- topaz
- torchdata
- torchvision
- tqdm
- trimAl
- typing-extensions
- u
- UCX-CUDA
- UCX
- UDUNITS
- UnZip
- Unicycler
- umap-learn
- unittest-xml-reporting
- utf8proc
- util-linux
- v
- VCFtools
- VSEARCH
- VTK
- Vala
- Valgrind
- Virtuoso-opensource
- Voro++
- vcflib
- velocyto
- vorbis-tools
- vsc-mympirun
- vt
- w
- WCT
- WIEN2k
- WPS
- WRF
- Wannier90
- WebKitGTK+
- WhatsHap
- WildMagic
- waLBerla
- wget
- wxPython
- wxWidgets
- x
- X11
- XCFun
- XGBoost
- XML-LibXML
- XML-Parser
- XZ
- Xerces-C++
- XlsxWriter
- Xvfb
- x264
- x265
- xarray
- xmlf90
- xorg-macros
- xprop
- xproto
- xtb
- xxd
- y
- YACS
- YAXT
- Yambo
- Yasm
- z
- Z3
- ZeroMQ
- Zgoubi
- Zip
- Zopfli
- zarr
- zfp
- zlib-ng
- zlib
- zsh
- zstd
- a
- AGeNT
- AOCC
- AOCL-BLAS
- ARAGORN
- AmberTools
- Autoconf
- Automake
- Autotools
- abTEM
- acpype
- aiida-core
- aiida-shell
- amdsmi
- anndata
- b
- BLAST+
- BLIS
- Bio-SearchIO-hmmer
- Bismark
- barrnap
- binutils
- bzip2
- c
- CMake
- CPPE
- Cantera
- CoordgenLibs
- cURL
- cairomm
- castor
- cuDNN
- cuSPARSELt
- d
- DjVuLibre
- dav1d
- davix
- deepdiff
- desktop-file-utils
- e
- EMBOSS
- Exonerate
- Extrae
- einops
- enchant-2
- evince
- expat
- f
- FFmpeg
- FPM
- FastANI
- FastQ_Screen
- FlexiBLAS
- file
- g
- GDGraph
- GI-DocGen
- GLibmm
- GMP
- GST-plugins-base
- Gaussian
- Graphviz
- gappa
- gettext
- git
- graphviz-python
- grpcio
- gspell
- gtk-doc
- gtkmm3
- gtkmm4
- gzip
- h
- HDF5
- HMMER
- hifiasm
- hunspell
- hwloc
- i
- ISA-L
- Infernal
- inih
- intronProspector
- ipympl
- j
- Jena
- jupyter-server
- k/Kraken
- l
- LAMMPS
- Lightning
- libaom
- libarchive
- libfabric
- libffi
- libgxps
- libhandy
- libiconv
- libidn2
- libpsl
- libreadline
- libsigc++
- libspectre
- libtommath
- libtool
- libunistring
- libxml2
- lz4
- m
- MDTraj
- MEGAHIT
- MLflow
- MOKIT
- MOPAC
- McStas
- MinCED
- maeparser
- make
- mallard-ducktype
- ml-collections
- mm-common
- morphosamplers
- n
- NCCL
- NCL
- NVHPC
- NVPL
- napari
- ncbi-vdb
- ncurses
- numdiff
- nvidia-compilers
- o
- ONNX-IR
- ONNX-Script
- ONNX
- OpenBLAS
- OpenBabel
- OpenH264
- OpenMM
- orjson
- p
- PICRUSt2
- Perl
- PnetCDF
- PyBerny
- PyHMMER
- PyOpenGL
- PyTorch
- Pygments
- Python
- pangomm
- paramiko
- pkgconf
- plumpy
- prodigal
- pyFFTW
- pybedtools
- pymatgen
- pypmt
- pyro-ppl
- python-casacore
- pyzstd
- q
- Qtconsole
- quarto
- r
- R-bundle-CRAN
- RAxML
- RDKit
- ROCm-LLVM
- RStudio-Server
- Racon
- Raptor
- Ruby
- ruff
- s
- SKA2
- SMV
- SPAdes
- SQLite
- SVT-AV1
- SciPy-bundle
- SymEngine
- scanpy
- scvi-tools
- segemehl
- setuptools
- t
- Tcl
- tensorboard
- tensorstore
- tiktoken
- u
- UnZip
- uncertainties
- v
- VeloxChem
- VisPy
- w/wget
- x
- X11
- XCFun
- XZ
- Xfce
- y
- yelp-tools
- yelp-xsl
- z
- zlib-ng
- zlib
- zstd
- test/easyconfigs
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