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‎.gitmodules‎

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[submodule "raw/datasets/carneiro"]
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path = raw/datasets/carneiro
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url = https://github.com/D-PLACE/dplace-dataset-carneiro
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[submodule "raw/datasets/carneiro4"]
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path = raw/datasets/carneiro4
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url = https://D-PLACE/dplace-dataset-carneiro4
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[submodule "raw/datasets/carneiro6"]
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path = raw/datasets/carneiro6
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url = https://D-PLACE/dplace-dataset-carneiro6
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[submodule "raw/datasets/binford"]
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path = raw/datasets/binford
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url = https://github.com/D-PLACE/dplace-dataset-binford
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[submodule "raw/phylogenies/greenhill2015"]
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path = raw/phylogenies/greenhill2015
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url = https://github.com/phlorest/greenhill2015
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[submodule "raw/phylogenies/greenhill_et_al2023"]
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path = raw/phylogenies/greenhill_et_al2023
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url = https://phlorest/greenhill_et_al2023
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[submodule "raw/phylogenies/grollemund_et_al2015"]
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path = raw/phylogenies/grollemund_et_al2015
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url = https://github.com/phlorest/grollemund_et_al2015
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[submodule "raw/phylogenies/hartmann_and_walkden2024"]
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path = raw/phylogenies/hartmann_and_walkden2024
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url = https://github.com/phlorest/hartmann_and_walkden2024
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[submodule "raw/phylogenies/honkola_et_al2013"]
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path = raw/phylogenies/honkola_et_al2013
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url = https://github.com/phlorest/honkola_et_al2013
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[submodule "raw/phylogenies/zhang_et_al2019"]
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path = raw/phylogenies/zhang_et_al2019
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url = https://github.com/phlorest/zhang_et_al2019
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[submodule "raw/phylogenies/holden_et_al2005"]
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path = raw/phylogenies/holden_et_al2005
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url = https://phlorest/holden_et_al2005
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[submodule "raw/phylogenies/michael_et_al2015"]
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path = raw/phylogenies/michael_et_al2015
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url = https://phlorest/michael_et_al2015
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[submodule "raw/phylogenies/rexova_et_al2006"]
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path = raw/phylogenies/rexova_et_al2006
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url = https://phlorest/rexova_et_al2006

‎cldf/trees/greenhill_et_al2023.trees‎

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#NEXUS
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[Summary tree of the Phlorest phylogeny derived from Greenhill, Haynie et al. 2023 'Uto-Aztecan (Greenhill, Haynie et al.)']
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BEGIN TREES;
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TREE summary = [&R] ((((((greenhill_et_al2023_Aztec_Tetelcingo_30:852.0985966139115,(greenhill_et_al2023_Aztec_Zacapoaxtla_31:673.5467822662504,greenhill_et_al2023_Classical_Aztec_29:228.54678226625037):178.5518143476611):773.5569673939012,greenhill_et_al2023_Pipil_32:1625.6555640078127):1242.1517171046894,(greenhill_et_al2023_Cora_27:1423.935498386155,greenhill_et_al2023_Huichol_28:1423.935498386155):1443.8717827263472):375.77218112126866,(((((greenhill_et_al2023_Eudeve_21:970.6341061140938,greenhill_et_al2023_Opata_20:970.6341061140938):677.0881384696504,(greenhill_et_al2023_Mayo_25:185.16823527899396,greenhill_et_al2023_Yaqui_26:185.16823527899396):1462.5540093047503):340.1156563077818,(greenhill_et_al2023_Guarijio_22:545.2529767867063,greenhill_et_al2023_Tarahumara_23:545.2529767867063):1442.5849241048197):623.1552135536529,greenhill_et_al2023_Tubar_24:2610.993114445179):352.6402289355078,(greenhill_et_al2023_Northern_Tepehuan_19:1008.5371992469645,((greenhill_et_al2023_Papago_Pima_17:517.9844832707329,greenhill_et_al2023_Pima_de_Onavas_18:517.9844832707329):293.73642172796394,greenhill_et_al2023_Southeastern_Tepehuan_33:811.7209049986968):196.8162942482677):1955.0961441337222):279.94611885308404):747.86487729192,((((greenhill_et_al2023_Cahuilla_12:821.6451959674805,greenhill_et_al2023_Cupeno_13:821.6451959674805):898.451524205675,greenhill_et_al2023_Luiseno_14:1720.0967201731555):1099.961453496589,(greenhill_et_al2023_Gabrielino_15:2261.7354971684745,(greenhill_et_al2023_Kitanemuk_34:729.9748549215165,greenhill_et_al2023_Serrano_11:729.9748549215165):1531.760642246958):558.32267650127):643.4943309967889,(((((((greenhill_et_al2023_Chemehuevi_7:351.1893578207846,greenhill_et_al2023_Southern_Paiute_8:351.1893578207846):113.11906683826419,greenhill_et_al2023_Kawaiisu_6:464.3084246590488):106.79625786667111,greenhill_et_al2023_Southern_Ute_9:571.1046825257199):543.3206351122499,((greenhill_et_al2023_Comanche_5:230.81303489613038,greenhill_et_al2023_Shoshoni_Gosiute_Dialect_4:230.81303489613038):249.78148900193082,greenhill_et_al2023_Pannamint_3:480.5945238980612):633.8307937399086):231.3446846774341,(greenhill_et_al2023_Mono_1:614.4177462693169,greenhill_et_al2023_Northern_Paiute_2:614.4177462693169):731.352256046087):900.1988322696425,greenhill_et_al2023_Hopi_16:2245.9688345850464):307.0910704370417,greenhill_et_al2023_Tubatulabel_10:2553.059905022088):910.4925996444454):527.8918348591574):1437.8522020985215,(greenhill_et_al2023_Kiowa_35:2076.5471011769896,greenhill_et_al2023_San_Juan_Pueblo_Tewa_36:2076.5471011769896):3352.7494404472227):0.0;
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END;

‎cldf/trees/hartmann_and_walkden2024.trees‎

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#NEXUS
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[Summary tree of the Phlorest phylogeny derived from Hartmann & Walkden 2024 'The strength of the phylogenetic signal in syntactic data']
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BEGIN TREES;
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TREE summary = [&R] (hartmann_and_walkden2024_Shupamem:1.000002,hartmann_and_walkden2024_Nweh:1.000002,hartmann_and_walkden2024_Kiyaka:1.000002,hartmann_and_walkden2024_Indonesian:1.000002,hartmann_and_walkden2024_Latin:1.000002,hartmann_and_walkden2024_Basaa:1.000002,hartmann_and_walkden2024_OluwangaEji:1.000002,hartmann_and_walkden2024_Ibibio:1.000002,hartmann_and_walkden2024_Hoan:1.000002,hartmann_and_walkden2024_Marshallese:1.000002,hartmann_and_walkden2024_Laal:1.000002,hartmann_and_walkden2024_Igbo:1.000002,hartmann_and_walkden2024_ArabicMoroccan:1.000002,hartmann_and_walkden2024_GreekMedieval:1.000002,hartmann_and_walkden2024_Polish:1.000002,hartmann_and_walkden2024_Albanian:1.000002,hartmann_and_walkden2024_FrenchOld:1.000002,hartmann_and_walkden2024_Finnish:1.000002,hartmann_and_walkden2024_Russian:1.000002,hartmann_and_walkden2024_GreekHomer:1.000002,hartmann_and_walkden2024_NahuatlCentralHuasteca:1.000002,hartmann_and_walkden2024_KurdishSorani:1.000002,hartmann_and_walkden2024_Kiche:1.000002,hartmann_and_walkden2024_ItalyTeramano:1.000002,hartmann_and_walkden2024_ItalySiciliano:1.000002,hartmann_and_walkden2024_Portuguese:1.000002,hartmann_and_walkden2024_ItalyNorthernCalabrese:1.000002,hartmann_and_walkden2024_TukangBesi:1.000002,hartmann_and_walkden2024_Kom:1.000002,hartmann_and_walkden2024_Twi:1.000002,hartmann_and_walkden2024_Moduokru:1.000002,hartmann_and_walkden2024_DagaraBurkina:1.000002,hartmann_and_walkden2024_DidaLakotadieko:1.000002,hartmann_and_walkden2024_Bambara:1.000002,hartmann_and_walkden2024_Kusaal:1.000002,hartmann_and_walkden2024_Ga:1.000002,(hartmann_and_walkden2024_Muyang:0.084975,hartmann_and_walkden2024_Mada:0.084975):0.915027,(hartmann_and_walkden2024_Vata:0.072899,hartmann_and_walkden2024_Guebie:0.072899):0.927103,(hartmann_and_walkden2024_Serbian:0.092277,hartmann_and_walkden2024_Croatian:0.092277):0.907725,(hartmann_and_walkden2024_AkanTwi:0.107367,hartmann_and_walkden2024_NzimaTiapoum:0.107367,hartmann_and_walkden2024_Abidji:0.107367):0.892635,(hartmann_and_walkden2024_Wolof:0.126992,hartmann_and_walkden2024_Haitian:0.126992):0.873010,(hartmann_and_walkden2024_PortugueseBrazilian:0.041434,hartmann_and_walkden2024_Italian:0.041434):0.958568,(hartmann_and_walkden2024_Chickasaw:0.403938,(hartmann_and_walkden2024_TupiTupinamba:0.111765,hartmann_and_walkden2024_Munduruku:0.111765):0.292173):0.596064,(hartmann_and_walkden2024_ItalyNapoletanoAntico:0.311129,(hartmann_and_walkden2024_Spanish:0.081715,hartmann_and_walkden2024_Catalan:0.081715):0.229414,((hartmann_and_walkden2024_ItalyReggiano:0.080912,hartmann_and_walkden2024_French:0.080912):0.164617,(hartmann_and_walkden2024_EnglishSingapore:0.096873,hartmann_and_walkden2024_English:0.096873):0.148656,(((hartmann_and_walkden2024_Icelandic:0.064441,hartmann_and_walkden2024_Faroese:0.064441):0.056372,(hartmann_and_walkden2024_Swedish:0.064322,(hartmann_and_walkden2024_Norwegian:0.037975,hartmann_and_walkden2024_Danish:0.037975):0.026347):0.056491):0.070399,(hartmann_and_walkden2024_Afrikaans:0.128651,(hartmann_and_walkden2024_FlemishWest:0.028097,hartmann_and_walkden2024_Dutch:0.028097):0.100554,(hartmann_and_walkden2024_PomeranianBrazilian:0.057669,hartmann_and_walkden2024_German:0.057669):0.070981):0.062561):0.054318):0.065600):0.688872,(hartmann_and_walkden2024_HebrewBiblical:0.202586,hartmann_and_walkden2024_Hebrew:0.202586,hartmann_and_walkden2024_ArabicGulf:0.202586):0.797416,((hartmann_and_walkden2024_ChineseWuhu:0.188798,hartmann_and_walkden2024_CantoneseGuangzhou:0.188798,(hartmann_and_walkden2024_TaiwaneseSouthernMin:0.080154,hartmann_and_walkden2024_Mandarin:0.080154):0.108644):0.180855,(hartmann_and_walkden2024_Bangla:0.254590,(hartmann_and_walkden2024_Korean:0.076788,hartmann_and_walkden2024_Japanese:0.076788):0.177802,(hartmann_and_walkden2024_Nepali:0.122685,hartmann_and_walkden2024_QuichuaImbaburaQuichua:0.122685):0.131905):0.115063):0.630349,(hartmann_and_walkden2024_GungbePorto_Novo:0.128609,hartmann_and_walkden2024_Nupe:0.128609):0.871393,(hartmann_and_walkden2024_Malagasy:0.166548,hartmann_and_walkden2024_Bafut:0.166548):0.833453,(hartmann_and_walkden2024_GreekAncient:0.329393,(hartmann_and_walkden2024_SaxonOld:0.094351,hartmann_and_walkden2024_EnglishOld:0.094351):0.235042):0.670609,(hartmann_and_walkden2024_Tommo_So:0.130703,hartmann_and_walkden2024_Skou:0.130703):0.869299,(hartmann_and_walkden2024_Yemba:0.118862,hartmann_and_walkden2024_TukiTukombo:0.118862):0.881140,(hartmann_and_walkden2024_Kusunda:0.454156,hartmann_and_walkden2024_GreekCappadocian:0.454156,hartmann_and_walkden2024_Pashto:0.454156,hartmann_and_walkden2024_Hungarian:0.454156,(hartmann_and_walkden2024_Georgian:0.254725,((hartmann_and_walkden2024_Turkish:0.116006,hartmann_and_walkden2024_Amharic:0.116006):0.082135,(hartmann_and_walkden2024_ArmenianWestern:0.115856,hartmann_and_walkden2024_ArmenianEastern:0.115856):0.082285):0.056584):0.199431):0.545846,(hartmann_and_walkden2024_LatinLate:0.113503,hartmann_and_walkden2024_Gothic:0.113503):0.886499,((hartmann_and_walkden2024_Miya:0.091684,hartmann_and_walkden2024_Hausa:0.091684):0.099309,(hartmann_and_walkden2024_Xhosa:0.072766,hartmann_and_walkden2024_KiLega:0.072766):0.118227):0.809009,(hartmann_and_walkden2024_Vietnamese:0.125423,hartmann_and_walkden2024_Garifuna:0.125423):0.874579,(hartmann_and_walkden2024_Thai:0.216208,hartmann_and_walkden2024_Dholuo:0.216208,hartmann_and_walkden2024_Bandial:0.216208):0.783794,((hartmann_and_walkden2024_galician:0.039356,hartmann_and_walkden2024_GreekCalabria:0.039356):0.216027,(hartmann_and_walkden2024_GreekCypriot:0.173461,(hartmann_and_walkden2024_Romanian:0.094291,hartmann_and_walkden2024_Greek:0.094291):0.079170):0.081922):0.744619,((hartmann_and_walkden2024_Samoan:0.157574,hartmann_and_walkden2024_Kuot:0.157574):0.109667,(hartmann_and_walkden2024_Tagalog:0.132283,hartmann_and_walkden2024_Qanjobal:0.132283):0.134958):0.732761):0.000000;
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END;

‎cldf/trees/holden_et_al2005.trees‎

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#NEXUS
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[Summary tree of the Phlorest phylogeny derived from Holden et al. 2005 'Comparison of Maximum Parsimony and Bayesian Bantu Language trees']
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BEGIN TREES;
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TREE summary = [&R] ((holden_et_al2005_BubiA31:0.0952756261,(((holden_et_al2005_TsogoB31:0.0767653289,holden_et_al2005_MpongweB11a:0.1038719915):0.0464406012,(((holden_et_al2005_FangA751:0.0335995997,holden_et_al2005_BakokoA43b:0.0568370061):0.0582375522,(holden_et_al2005_PukuA321:0.0242906253,holden_et_al2005_DualaA242:0.0718550794):0.0162519792):0.0155677409,holden_et_al2005_KotaB251:0.0485785908):0.0124472177):0.0103399556,(((holden_et_al2005_MadzingB80Mp1:0.0519026573,((((holden_et_al2005_SundiH16i4:0.0358515086,holden_et_al2005_SikongoH16h:0.0242703706):0.0120836877,holden_et_al2005_YombeH12b1:0.0365534327):0.0018211167,((holden_et_al2005_YakaH314:0.020941226,holden_et_al2005_SukuH32:0.0124209686):0.0093191275,holden_et_al2005_YakaKasongoH312:0.0157050717):0.0324596801):0.0164561853,holden_et_al2005_TekeB735:0.0711808018):0.013481965):0.0378045544,(holden_et_al2005_BinjaD241:0.0694613689,((((((((holden_et_al2005_TumbukaN212:0.0370877035,holden_et_al2005_MakwaP311:0.0970336274):0.0040537733,(holden_et_al2005_SenaN44:0.0281342641,(holden_et_al2005_KundaN42:0.0151416265,(holden_et_al2005_NyasaN31:0.0083716247,(holden_et_al2005_CewaN31b:0.0072655048,holden_et_al2005_NyanjaN31a:0.0094019816):0.0016072564):0.0256102587):0.0020785678):0.0288214372):0.0130206523,((holden_et_al2005_NdauS15:0.0198518658,holden_et_al2005_ShonaS10:0.0167184415):0.0338596261,(holden_et_al2005_VendaS21:0.0292288593,((holden_et_al2005_TswanaS31:0.0161493842,(holden_et_al2005_LoziS34:0.018507755,holden_et_al2005_SothoS33:0.0092773941):4.391813E-4):0.0497949529,(holden_et_al2005_TsongaS53:0.0468549202,(holden_et_al2005_NgoniS45:0.0247395369,(((holden_et_al2005_SwatiS43:0.0027809813,holden_et_al2005_NdebeleS44:0.0214082199):0.0060876847,holden_et_al2005_XhosaS41:0.0133403317):0.0096767689,holden_et_al2005_ZuluS42:0.0016529711):0.0032778107):0.0366942286):0.0086292694):0.0250940658):0.0094622631):0.0389769289):0.0114457879,(holden_et_al2005_MambweM15:0.0635904558,((((((holden_et_al2005_DigoE731:0.028820257,holden_et_al2005_GiryamaE72a1:0.0353407651):0.0016590907,(holden_et_al2005_HadimuG43c:0.0290241893,holden_et_al2005_PokomoE711:0.0416924892):0.0150918773):0.0278696491,((holden_et_al2005_LuguruG35:0.0452885995,(holden_et_al2005_GogoG11:0.0280005448,holden_et_al2005_KaguruG12:0.0152581149):0.0028785888):0.011022647,((holden_et_al2005_ZigulaG31:0.00958536,holden_et_al2005_ShambalaG23:0.0171622364):0.0046868396,holden_et_al2005_NguluG34:0.0016954841):0.0147101999):0.0264856546):0.0103093563,(holden_et_al2005_SagalaE74b:0.0636313019,((holden_et_al2005_KambaE55:0.0160412108,holden_et_al2005_GikuyuE51:0.0556832631):0.0459423956,holden_et_al2005_CagaE621:0.0911894779):0.017275556):0.0076115144):0.0130057451,(holden_et_al2005_NyakyusaM312:0.0758853942,holden_et_al2005_YaoP212:0.0687475705):0.015847873):0.0124699356,((((holden_et_al2005_GandaJ15:0.035043019,holden_et_al2005_SogaJ16:0.0180855615):0.0304949876,(holden_et_al2005_HayaJ22H:0.0217434641,(holden_et_al2005_HimaJ13:0.0173460254,holden_et_al2005_ZinzaJ23:0.0157841306):0.0084628256):0.0206569535):0.0160880234,(((holden_et_al2005_ShiJ53:0.0181066245,holden_et_al2005_HundeJ51:0.0091693883):0.0251366614,(holden_et_al2005_RundiJ62:0.0054068448,holden_et_al2005_RwandaJ611:0.0091383996):0.029344339):0.0030843394,holden_et_al2005_LegaD253:0.0812217544):0.0046180735):0.0168753801,(holden_et_al2005_SumbwaF23:0.015832099,(holden_et_al2005_NyamweziF22:0.0100581539,holden_et_al2005_SukumaF21:0.0338525903):0.0236150207):0.0188056108):0.0109434069):0.0075101704):0.0047176242):0.0193701057,holden_et_al2005_TongaM641:0.0404516453):0.0084431173,(holden_et_al2005_BembaM42:0.0171346412,(holden_et_al2005_LalaM52:0.0079454708,holden_et_al2005_LambaM54:0.0102930404):0.013944703):0.0207242763):0.0247995719,(holden_et_al2005_KaondeL42:0.0078620962,(holden_et_al2005_LubaL33:0.0126972709,holden_et_al2005_SongeD10S:0.070506148):0.0136944589):0.027346834):0.0119005394,((((holden_et_al2005_NdembuK221:0.0527747125,holden_et_al2005_CiokweK11:0.0320190741):0.0075766983,holden_et_al2005_LwenaK141:0.0272607141):0.0293996772,holden_et_al2005_GangelaK19:0.0636336593):0.0169927141,((holden_et_al2005_HereroR31:0.0320480152,holden_et_al2005_NdongaR22:0.0131288913):0.0249998796,holden_et_al2005_UmbunduR111:0.0652697642):0.0218889538):0.02790589):0.007347939):0.0271980518):0.0017194461,(((holden_et_al2005_KumuD372:0.0860492119,holden_et_al2005_BiraD322:0.056448569):0.0658351951,((holden_et_al2005_NgombeC41:0.0498419415,holden_et_al2005_DokoC40D:0.0318645868):0.0254782439,holden_et_al2005_LingalaC36:0.0445188867):0.0143405973):0.0112418193,(((holden_et_al2005_SakataC34:0.0908491198,holden_et_al2005_LeleC841:0.0497044776):0.0038844782,(holden_et_al2005_TetelaC711:0.0927661164,(holden_et_al2005_MongoC613:0.0424267143,(holden_et_al2005_KelaC75:0.025698096,holden_et_al2005_MongoNkundoC611:0.0382429737):0.0078648692):0.0135274196):0.0133083465):0.0310795659,(holden_et_al2005_LikileC57:0.0484609215,holden_et_al2005_MbesaC51:0.1079419589):0.0325378902):0.002417449):0.0083860374):0.0109266762):0.0163855987):0.0489373996,(holden_et_al2005_Ejagham800:0.0789782427,holden_et_al2005_Tiv802:0.1034435667):0.026170965);
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END;

‎cldf/trees/michael_et_al2015.trees‎

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#NEXUS
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[Summary tree of the Phlorest phylogeny derived from Michael et al. 2015 'A Bayesian Phylogenetic Classification of Tupi-Guarani']
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BEGIN TREES;
5+
TREE summary = [&R] (michael_et_al2015_Ache:0.056213,(((michael_et_al2015_Kaiowa:0.004903,michael_et_al2015_Nandeva:0.002714):0.003056,michael_et_al2015_Xeta:0.024403):0.004114,(michael_et_al2015_Tapiete:0.014869,michael_et_al2015_Chiriguano:0.008077):0.006259):0.003283,((michael_et_al2015_GuaraniParaguaio:0.01424,michael_et_al2015_Mbya:0.015536):0.001179,((michael_et_al2015_Guarayu:0.007241,michael_et_al2015_Pauserna:0.023586):0.002729,(michael_et_al2015_Siriono:0.029148,michael_et_al2015_Yuki:0.047685):0.022178,(((michael_et_al2015_Omagua:0.003448,michael_et_al2015_Kokama:0.005744):0.031497,michael_et_al2015_Tupinamba:0.005404):0.001395,(((((((michael_et_al2015_Tapirape:0.015475,(michael_et_al2015_Tocantins:0.007677,michael_et_al2015_Parakana:0.016895):0.006819):0.004264,((michael_et_al2015_Anambe:0.007323,michael_et_al2015_Arawete:0.010126):0.007101,michael_et_al2015_Xingu:0.014245):0.003841):0.002698,(michael_et_al2015_Kamaiura:0.010494,(michael_et_al2015_Aweti:0.023818,michael_et_al2015_Mawe:0.054704):0.022029):0.003273):0.001523,(michael_et_al2015_AvaCanoeiro:0.009595,michael_et_al2015_Kaapor:0.019213,michael_et_al2015_Guaja:0.021518):0.005315):0.002333,(michael_et_al2015_Kayabi:0.018785,michael_et_al2015_Parintintin:0.015778):0.005118):8.79E-4,(michael_et_al2015_Wayampi:0.016017,michael_et_al2015_Emerillon:0.026484):0.013925):0.001587,michael_et_al2015_Tembe:0.020313):0.001185):0.002675):0.002147):0.002129);
6+
END;

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