ref: process_mask was renamed to process_labels

Author: paulmueller

chipstream/cli/cli_common.py

@@ -87,8 +87,9 @@ def get_choices_help_string_segmenter(class_dict):
         static_kw_methods = ["segment_algorithm"]
         static_kw_defaults = {}
         if class_obj.mask_postprocessing:
-            static_kw_methods.append("process_mask")
-            static_kw_defaults["process_mask"] = class_obj.mask_default_kwargs
+            static_kw_methods.append("process_labels")
+            static_kw_defaults["process_labels"] = \
+                class_obj.mask_default_kwargs
         info_list.append(get_class_method_info(class_obj,
                                                static_kw_methods,
                                                static_kw_defaults))

chipstream/cli/cli_valid.py

@@ -104,7 +104,7 @@ def validate_segmentation_kwargs(seg_method, args):
     annot_appr = spec_appr.annotations
     # process_mask
     if seg_cls.mask_postprocessing:
-        spec_mask = inspect.getfullargspec(seg_cls.process_mask)
+        spec_mask = inspect.getfullargspec(seg_cls.process_labels)
         valid_kw_mask = spec_mask.kwonlyargs
         annot_mask = spec_mask.annotations
     else: